Gene Information

Name : yscF (YpAngola_B0057)
Accession : YP_001604488.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion apparatus needle protein YscF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 38665 - 38928 bp
Length : 264 bp
Strand : +
Note : identified by similarity to SP:Q01247; match to protein family HMM TIGR02105

DNA sequence : 
ATGAGTAACTTCTCTGGATTTACGAAAGGAACCGATATCGCAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGATGCAAACAAAGCGGTTAATGACTCGATAGCAGCATTGAAAGATAAGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAACTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscF YP_001604488.1 type III secretion apparatus needle protein YscF VFG0405 Protein 5e-35 100
yscF YP_001604488.1 type III secretion apparatus needle protein YscF VFG0214 Protein 2e-19 69