|
Name : yscC (YpAngola_B0054) Accession : YP_001604484.1 Strain : Genome accession: NC_010157 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore YscC Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 35373 - 37211 bp Length : 1839 bp Strand : + Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : GTGGAATTAAGTAATATGGCTTTTCCGCTACATTCTTTTTTCAAGCGCGTACTCACCGGGACGTTACTGTTACTTTCTAA CTATAGCTGGGCGCAAGAACTTGATTGGTTGCCTATACCTTATGTTTATGTGGCGAAGGGGGAAAGTTTACGCGATTTAT TAATTGATTTCAGCGCTAATTATGATGCTACAGTGGTAGTAAGCGATAAGATTAATGACAAAGTTTCCGGCCAGTTTGAG CATGATAACCCTCAGGATTTCCTACAGCATATTGCCTCCCTTTACAATTTGGTTTGGTACTATGATGGCAATGTGCTCTA CATTTTTAAAAATAGTGAGGTAGCGTCTCGTCTCATTCGTTTACAGGAAAGTGAGGCCGCAGAGTTAAAGCTGGCATTAC AACGTTCTGGTATATGGGAGCCTCGTTTTGGCTGGCGCCCTGATGCTAGCAACCGCCTTGTTTACGTCTCTGGTCCTCCT CGTTATCTTGAATTGGTTGAACAGACCGCAGCCGCATTGGAACAACAGACGCAAATTCGCAGTGAAAAAACAGGGGCATT AGCGATTGAGATTTTCCCTCTCAAATATGCATCAGCGAGCGATCGAACTATTCATTACCGTGATGACGAAGTGGCTGCTC CTGGGGTTGCAACGATACTTCAACGCGTGTTAAGCGATGCCACAATCCAACAAGTGACAGTGGATAATCAGAGAATACCG CAGGCCGCTACCCGGGCTTCAGCTCAAGCCAAGGTTGAAGCGGATCCATCGCTCAATGCGATAATAGTGCGCGATTCTCC TGAGCGTATGCCAATGTATCAACGGTTAATTCATGCGCTTGATAAACCTAGCGCTCGTATTGAAGTGGCGTTATCCATTG TCGATATAAATGCCGACCAACTTACTGAATTAGGTGTGGACTGGCGAGTTGGCATTCGTACTGGCAACAATCATCAGGTG GTAATAAAAACAACCGGGGATCAAAGTAACATCGCTTCAAACGGTGCATTGGGTAGTTTGATTGATGCTCGCGGGCTTGA CTACCTATTAGCAAGAGTCAATTTACTTGAAAATGAAGGTTCGGCTCAAGTTGTTTCACGTCCGACCCTGCTAACACAAG AAAATGCCCAAGCGGTGATTGATCACCATGAAACCTATTACGTCAAAGTGACAGGTAAAGAAGTGGCTGAACTGAAAGGG ATCACCTACGGCACTATGCTGCGTATGACACCAAGGGTGCTGACTCAAGGAGATAAGTCAGAAATCAGTCTCAATCTACA CATTGAGGATGGGAACCAAAAACCGAATAGTTCAGGGATTGACGGAATCCCCACTATCAGTCGTACGGTCGTTGATACTG TCGCTCGCGTGGGACATGGCCAGAGTTTGATTATTGGTGGTATTTATCGTGACGAATTGAGTGTTGCTCTTAGTAAGGTG CCTTTGCTTGGTGATATTCCTTATCTTGGCGCACTTTTCCGCCGTAAAAGTGAGTTAACTCGCCGTACGGTACGGCTGTT TATCATCGAACCACGGATTATTGACGAAGGTATTGCGCATCATTTAGCGTTAGGTAATGGTCGGGATCTACGTACTGGTA TCTTAGCTGTTGATGAAATATCTAATCAAAGCACTACCTTGAATAAGTTATTAGGTGGCTTCCAGTGTCAGCCTTTAAAC AAAGCGCAAGAAGTGCAGAAATGGCTGAGTCAAAACAATAAATCATCCTATCTTACTCAGTGCAAGATGGACAAAAGTTT GGGATGGCGCGTGGTTGAAGGTGCTTGTACTCCCGCGGAATCATGGTGTGTTTCAGCGCCTAAGCGTGGCGTATTGTGA Protein sequence : MELSNMAFPLHSFFKRVLTGTLLLLSNYSWAQELDWLPIPYVYVAKGESLRDLLIDFSANYDATVVVSDKINDKVSGQFE HDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKLALQRSGIWEPRFGWRPDASNRLVYVSGPP RYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIP QAATRASAQAKVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQV VIKTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTGKEVAELKG ITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKV PLLGDIPYLGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGRDLRTGILAVDEISNQSTTLNKLLGGFQCQPLN KAQEVQKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscC | YP_001604484.1 | type III secretion outer membrane pore YscC | VFG0402 | Protein | 0.0 | 100 |
| yscC | YP_001604484.1 | type III secretion outer membrane pore YscC | VFG0211 | Protein | 0.0 | 64 |
