Gene Information

Name : lcrF (YpAngola_B0050)
Accession : YP_001604481.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : thermoregulatory protein LcrF
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 33751 - 34566 bp
Length : 816 bp
Strand : +
Note : identified by similarity to SP:P28808; match to protein family HMM PF00165

DNA sequence : 
ATGGCATCACTAGAGATTATTAAATTAGAATGGGTCACACCTATATTTAAGGTTGTTGAGCATTCACAAGATGGCCTATA
TATTCTTTTGCAAGGTCAGATTTCATGGCAGAGCAGCGGTCAGACATATGATTTAGATGAGGGGAATATGCTGTTTTTGC
GTCGTGGCAGCTATGCTGTTCGATGTGGTACAAAAGAACCCTGCCAATTACTTTGGATTCCATTACCCGGCAGTTTTTTG
AGTACTTTTTTGCATCGCTTTGGTTCTTTGCTTAGTGAAATTGGACGAGACAACTCCACACCCAAACCATTGTTAATTTT
TAATATTTCACCAATATTATCACAATCCATTCAAAATCTATGTGCCATATTGGAACGGAGTGATTTTCCGTCAGTATTAA
CGCAACTGCGTATTGAGGAATTACTGCTTTTGCTTGCCTTTAGCTCGCAAGGGACTTTATTTCTCTCGGCTCTGCGCCAT
TTAGGCAACCGCCCAGAAGAACGGTTGCAAAAATTTATGGAGGAAAATTATCTACAAGGGTGGAAGCTAAGCAAATTTGC
GCGAGAATTCGGCATGGGATTAACCACATTCAAAGAACTGTTTGGTACAGTTTATGGCATTTCACCACGCGCCTGGATAA
GCGAGCGACGTATTCTCTATGCTCACCAATTACTTCTTAATGGTAAGATGAGTATTGTTGATATTGCCATGGAAGCGGGG
TTCTCGAGTCAGTCTTATTTCACTCAAAGTTATCGACGTCGCTTCGGATGCACTCCAAGCCAAGCCCGTCTTACTAAAAT
AGCAACCACAGGCTAA

Protein sequence : 
MASLEIIKLEWVTPIFKVVEHSQDGLYILLQGQISWQSSGQTYDLDEGNMLFLRRGSYAVRCGTKEPCQLLWIPLPGSFL
STFLHRFGSLLSEIGRDNSTPKPLLIFNISPILSQSIQNLCAILERSDFPSVLTQLRIEELLLLLAFSSQGTLFLSALRH
LGNRPEERLQKFMEENYLQGWKLSKFAREFGMGLTTFKELFGTVYGISPRAWISERRILYAHQLLLNGKMSIVDIAMEAG
FSSQSYFTQSYRRRFGCTPSQARLTKIATTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscA AAO18036.1 LscA Virulence TTSS locus Protein 5e-82 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrF YP_001604481.1 thermoregulatory protein LcrF VFG0399 Protein 2e-121 100
lcrF YP_001604481.1 thermoregulatory protein LcrF VFG0208 Protein 1e-70 57