Gene Information

Name : yscQ (YpAngola_B0044)
Accession : YP_001604475.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 28970 - 29893 bp
Length : 924 bp
Strand : +
Note : identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551

DNA sequence : 
ATGAGTTTGTTAACCTTGCCACAGGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCAACAAAACTA
CTTGTGGGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGA
AGGGAACGCACTTCACGCTCTACTGTTTTGGCAATGATCTGGCTAACTGGTTAACCGCCGACTTACTAGGGGCTCCATTC
TTTACTCTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATAT
AGCGACAGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGC
TAACCTCAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTATTTCT
TTGCGTTGGCATAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGG
GAGTGGGCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGG
AGTTTATCGGTATGAGTCATGAATCTGACGAACTTAACCCCGAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTT
AGCTTTGAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAAC
ACCTGTTGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGGCGCC
TCGGGGTTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPF
FTLPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS
LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQV
SFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 6e-61 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscQ YP_001604475.1 type III secretion system protein VFG0393 Protein 4e-139 100
yscQ YP_001604475.1 type III secretion system protein VFG0189 Protein 7e-45 41