Gene Information

Name : yopN (YpAngola_B0040)
Accession : YP_001604471.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion regulator YopN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 24747 - 25628 bp
Length : 882 bp
Strand : -
Note : identified by match to protein family HMM PF07201; match to protein family HMM TIGR02568

DNA sequence : 
ATGACGACGCTTCATAACCTATCTTATGGCAATACCCCGCTGCATAATGAGCGTCCAGAGATTGCCAGTAGTCAGATCGT
AAATCAGACTCTGGGTCAATTTCGGGGAGAATCTGTGCAGATAGTCAGCGGCACTCTGCAGTCTATAGCTGATATGGCAG
AAGAGGTAACATTTGTCTTCTCCGAGCGTAAGGAGCTCTCCCTCGACAAACGCAAATTAAGTGACAGCCAGGCTCGAGTT
AGCGACGTTGAGGAGCAGGTTAATCAATACCTTAGCAAAGTTCCAGAGTTGGAACAAAAACAGAATGTGAGTGAGCTGCT
CAGTCTGTTGAGTAACAGCCCCAATATAAGCTTGTCCCAGTTAAAGGCTTATCTGGAGGGGAAATCAGAAGAACCGAGTG
AGCAATTCAAAATGCTCTGCGGCTTGCGTGATGCCCTGAAAGGGCGCCCTGAATTAGCACATCTTTCGCATTTGGTTGAA
CAAGCTCTGGTCAGCATGGCTGAAGAGCAAGGAGAAACCATTGTATTGGGTGCCAGGATAACCCCGGAAGCGTACAGAGA
ATCCCAGTCGGGTGTTAATCCACTGCAGCCGCTCCGTGATACCTACCGCGATGCAGTGATGGGTTATCAAGGAATTTATG
CGATCTGGAGTGATTTACAAAAACGTTTTCCTAATGGGGATATAGACTCGGTGATATTATTCCTGCAAAAGGCGCTTAGT
GCAGATCTACAAAGTCAACAAAGCGGGTCTGGACGGGAAAAATTAGGAATAGTTATTAGTGACTTACAGAAGCTAAAGGA
GTTTGGTAGCGTGAGTGACCAAGTTAAAGGATTTTGGCAATTTTTTTCAGAGGGTAAAACTAATGGCGTACGACCTTTCT
GA

Protein sequence : 
MTTLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTFVFSERKELSLDKRKLSDSQARV
SDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVE
QALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQKALS
ADLQSQQSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQFFSEGKTNGVRPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopN AAO18045.1 LopN Virulence TTSS locus Protein 3e-52 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopN YP_001604471.1 type III secretion regulator YopN VFG0389 Protein 3e-124 100
yopN YP_001604471.1 type III secretion regulator YopN VFG0193 Protein 3e-50 48