Gene Information

Name : lcrR (YpAngola_B0034)
Accession : YP_001604465.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion system regulator LcrR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 20886 - 21326 bp
Length : 441 bp
Strand : -
Note : identified by similarity to SP:P69960; match to protein family HMM TIGR02572

DNA sequence : 
ATGATGGCAGATCCTTTAATTCCGTGGCTTACCGAACATGGCTTGGTTTGCCACCCTCATACTTTGTCTGGCACCCCCAT
TTCTTTAGGTTCGGCCTTTCAATTAGCTGGCCTCAAGCTTGCCTGGCGCGTAGAAATTGAACAAAGGCGGGTTTGGATCG
TGCTTATCCAACGAGTGGAACAACGTCGAGGGCTGAAAAATCCCTTCGCGGCACTTTATATGTTAGCTAATGCAGCGCGG
GCCGTTCTTGGCCCTGACTATTATCTGTATGGCAATGTCGATGTACTGGCGGGGAGTTCTCTCAGTACGCAACGGCTCGC
TCATTTTTATCGGCGTTGGACCGGGGCCAAAGAATTAAGCACCGGGTGGTTCTCACTAAAAGTATCACAAGTCATCACCT
TATCTAATATGAAAAAGCGACAAAACAACGGCTTTGCCTGA

Protein sequence : 
MMADPLIPWLTEHGLVCHPHTLSGTPISLGSAFQLAGLKLAWRVEIEQRRVWIVLIQRVEQRRGLKNPFAALYMLANAAR
AVLGPDYYLYGNVDVLAGSSLSTQRLAHFYRRWTGAKELSTGWFSLKVSQVITLSNMKKRQNNGFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssR AAO18051.1 LssR Virulence TTSS locus Protein 4e-26 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrR YP_001604465.1 type III secretion system regulator LcrR VFG0383 Protein 3e-59 100
lcrR YP_001604465.1 type III secretion system regulator LcrR VFG0199 Protein 1e-26 52