Gene Information

Name : lcrH (YpAngola_B0031)
Accession : YP_001604462.1
Strain :
Genome accession: NC_010157
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 19056 - 19562 bp
Length : 507 bp
Strand : -
Note : identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552

DNA sequence : 
ATGCAACAAGAGACGACAGACACTCAAGAATACCAGCTGGCAATGGAATCCTTCCTAAAAGGAGGGGGAACTATCGCCAT
GCTCAACGAAATTTCAAGTGACACTTTAGAGCAACTCTACTCTCTTGCATTTAACCAATACCAGTCAGGAAAATACGAGG
ATGCTCACAAGGTCTTTCAAGCTCTCTGTGTGCTAGACCACTATGATTCACGTTTCTTTTTAGGGCTAGGCGCTTGTCGT
CAAGCCATGGGGCAATACGACTTAGCGATTCATAGCTACAGCTATGGCGCCATAATGGATATAAAAGAACCTCGTTTTCC
GTTTCATGCGGCCGAATGTTTACTGCAAAAGGGAGAGCTTGCTGAAGCAGAAAGTGGCTTGTTCTTGGCTCAAGAGCTTA
TCGCAGACAAAACTGAGTTTAAGGAGCTTTCCACCCGAGTTAGCTCAATGTTAGAAGCAATTAAATTGAAAAAGGAGATG
GAACATGAGTGCGTTGATAACCCATGA

Protein sequence : 
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR
QAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEM
EHECVDNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssH AAO18054.1 LssH Virulence TTSS locus Protein 1e-47 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrH YP_001604462.1 type III secretion low calcium response chaperone LcrH VFG0380 Protein 5e-75 100
lcrH YP_001604462.1 type III secretion low calcium response chaperone LcrH VFG0202 Protein 4e-45 57