Gene Information

Name : GDI_3420 (GDI_3420)
Accession : YP_001603651.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_010125
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3522055 - 3522831 bp
Length : 777 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACGGGGTGCGATCATGTCTGACCGGGCCATGAATGCGACGTCGAAACCTGAACCGTCCACGGCTGGAAGGGATTC
CGATCCCGGACGGGATCCCGGCCCCCGGGTCCTGCTGGTCGAGGATGACGGCAAGATCGCGCAGGAAGTCGCCGAGGAAC
TGGAAAGCCGCGGCTTTCGCGTCAGCCGTGCGGAAACCGGCCCCGATGGGCTGTCAGCGGGCATCAGCGGCCTGTTCGAC
GTGATGATCGTGGACCGCATGCTGCCCGAAATGGACGGGTTGACGCTGATCGAGAGCCTGCGCGGCCGGCAGGTGTCCAC
CCCGGTACTGGTGCTGTCCGCGCTGTCGGCGGTCGATGACCGGGTCAGCGGCCTGAAGGCGGGGGGGGACGATTACCTGA
CCAAGCCCTTCGCGATGGAGGAACTGGCCGCCCGGATCGAGGCGCTGATGCGCCGCCCCAACAACACGCGCGAGACCATG
CTGCATGTGGGCCCGCTGAGCATGGACCTGATCGAGCGCACCGTGACCCGCGACGGCGAGCCGATCGACCTGCTGCCGCG
CGAATTCCGCCTGCTGGAATACCTGATGCGCCGCCCGAACCAGGTGCTGACCCGCACCATGCTGCTGGAAGACGTCTGGA
ATTACCGCTTCATTCCGCAGACCAACCTGGTGGACGTGCATATCGGCAAGCTGCGCCGCAAGATCGACGATCCCGGTGCG
CAACCGCTGATCCAGAGCATTCGGGGCACCGGTTTCATGCTACGTGTCCCGGAGTGA

Protein sequence : 
MKRGAIMSDRAMNATSKPEPSTAGRDSDPGRDPGPRVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFD
VMIVDRMLPEMDGLTLIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNNTRETM
LHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNYRFIPQTNLVDVHIGKLRRKIDDPGA
QPLIQSIRGTGFMLRVPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0125 Protein 2e-42 46
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0197 Protein 6e-40 43
GDI_3420 YP_001603651.1 two component transcriptional regulator HE999704.1.gene1528. Protein 2e-32 42
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0083 Protein 1e-42 42
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0347 Protein 3e-42 41
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0111 Protein 8e-45 41
GDI_3420 YP_001603651.1 two component transcriptional regulator BAC0638 Protein 6e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GDI_3420 YP_001603651.1 two component transcriptional regulator VFG1389 Protein 9e-39 44
GDI_3420 YP_001603651.1 two component transcriptional regulator VFG1390 Protein 3e-39 42
GDI_3420 YP_001603651.1 two component transcriptional regulator VFG0596 Protein 5e-36 41