Gene Information

Name : ctrD (GDI_2409)
Accession : YP_001602653.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_010125
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export ATP-binding protein ctrD
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 2497999 - 2498646 bp
Length : 648 bp
Strand : -
Note : -

DNA sequence : 
ATGATTCGGTGTATTGATCTCGTAAAAGACTATCATACACCCGGTGGAAAGCGGCGTGTGCTTGATCGTGTCAATTTCCA
ACTGGATCGTGGGCAGAAGCTGGGGATACTTGGCCGGAATGGCGCGGGAAAATCGACATTAATCCGCATCATTGGAGGAG
TGGATTTTGCGACGTCGGGACGTATTGAACGTACGATGTCCGTCTCTTGGCCGCTGGCATTCGGTGGGGCCTTCCAGGGA
AGCCTGAGCGGTCTAGATAATTTACGTTTTATTTGCAGGATTTACGATCTCGATTATCCGGCCACGCGTGCATTCGTGGA
TGATTTTGCCGAACTCGGCCGGCAATTAGGGGAGCCGGTCAAGACCTACTCCTCGGGTATGCGGGCACGCCTCGCGTTCG
CATTGTCAATTATCATCGAATTTGATTGCTACCTTATCGATGAGGTTATCATGGTTGGTGACGCTCGCTTTCTGGCTCGG
TGCCAAGATGAACTGTTTGGCAAACGGCGAGAGCGGTCTTTGATAGTCGTCTCACATAATATGGATTTTATACGAGAACA
TTGCGATCATGCTGCAATTATCCATGAGCGCCAATTTTCTCTTTACGATAATGTACAGGATGCAATCGCAACTTACGAAC
GTCTGTAA

Protein sequence : 
MIRCIDLVKDYHTPGGKRRVLDRVNFQLDRGQKLGILGRNGAGKSTLIRIIGGVDFATSGRIERTMSVSWPLAFGGAFQG
SLSGLDNLRFICRIYDLDYPATRAFVDDFAELGRQLGEPVKTYSSGMRARLAFALSIIIEFDCYLIDEVIMVGDARFLAR
CQDELFGKRRERSLIVVSHNMDFIREHCDHAAIIHERQFSLYDNVQDAIATYERL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 6e-59 56
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-42 46
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 5e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrD YP_001602653.1 capsule polysaccharide export ATP-binding protein ctrD VFG0696 Protein 2e-59 57
ctrD YP_001602653.1 capsule polysaccharide export ATP-binding protein ctrD VFG2563 Protein 1e-57 57
ctrD YP_001602653.1 capsule polysaccharide export ATP-binding protein ctrD VFG0258 Protein 2e-59 56
ctrD YP_001602653.1 capsule polysaccharide export ATP-binding protein ctrD VFG1449 Protein 6e-43 46