Gene Information

Name : fliI (GDI_1668)
Accession : YP_001601913.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_010125
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1692409 - 1693776 bp
Length : 1368 bp
Strand : +
Note : involved in type III protein export during flagellum assembly

DNA sequence :
ATGCGGACCGCCGTGGCTGCGCCGCGCCACGATGTCCCGGTTGGCGTTCTTGAGGGGCGGGTGACCGGGCTGTCGGGATT
GACCGTGTCGCTCAGCGGCCTGCGGGATTTCACCGGGGTGGGGGATCGGGTGACGATCTTCGGCCTGGACGGGCGTGAGA
CCGATGCGGATATCCTCCCCTTTCACATCAACACCGCGATCATCATGCCGTACGGATCGCTGGAGGGGATCGGGTCGGGA
TGCCGGGCCATGTTCCAGCTGTTCGACCCGGAGCAGAGAAGGCGGCGGGCTGGCGGCACCTTGGTCGTCAATGATGCATG
GCAGGGGCGTGTCATCGACCCTATGGGCAGGCCCATTGACGGAAAGGGGCCGCTGCCCCCTGACGGCGTGCCCCAGAAGC
TGCATGCTCCCCCGCCCGAGGCGGCGCTCCGGGCGCGGCTCGGCCCGCGCATCGATCTCGGCGTGCGCGTGCTCAACCTG
TTCGCGACATGCCGCGAGGGCCAGAGGCTGGGTCTGTTTGCCGGCTCCGGCGTCGGGAAATCCACCCTGATGGGCATGCT
GGCCCGCAACACGGACTGCGACGTTGCGGTCATCGCCCTGGTGGGGGAGCGGGGACGGGAAGTCAGGGAGTTTGTCGAGG
ACGATCTTGGGCCGGAAGGGCTGGCCAAGTCGGTTGTCGTGGTCGCCACCTCTGATACGTCGCCGTTGATGCGCCGGGAA
GCGGCGTATGCCGCGACGGCTGCTGCCGAGCATTTCAGGGATCAGGGCAAGTCCGTCCTGCTGCTGATGGACAGTGTCAC
CCGGTTCTGCCAGGCCCTGCGGGAGATCGGCCTGTCGTCCGGCGAGCCCCCTGCCACCAGGGGGTATCCGCCGAGCGTCT
TCGCCGAGTTGCCGCGCCTGCTTGAACGCGCGGGGCCGGGCCTTCCCGGTCCGGACGGGAAGGCGGGGCAGATTACCGCC
ATGTTCTCGGTCCTCGTCGAGGGTGATGACCATAACGAACCGGTCGCCGACGCGGTGCGCGGCATTCTGGACGGACATGT
CGTCATGGAACGGCGGATCGCGGAGTCCGGACGGTACCCCGCCATCAATGTCCTTCGCTCGCTCTCGCGGACCGTTCCCG
GATGCAATTCTGCTGAGGAAAACGCGTTGACCCGCGATGCGCGGGCCGACCTGTCGACCTGGGAGGAAATGCAGGACATG
GTCCGCCTGGGCGCCTACCGCGCGGGGAATGATCCGAAGGTCGATCAGGCAATCCGTATCGCGCCCGCCATTGAAGAGAT
TCTGAGGCAGGGACGCGGCGAGAAAGCCACGATTGCCGAAAGCTTCGACGCCCTGCGCGCCGCCTTGTCGCCGCCCGGGA
CTCCGTGA

Protein sequence :
MRTAVAAPRHDVPVGVLEGRVTGLSGLTVSLSGLRDFTGVGDRVTIFGLDGRETDADILPFHINTAIIMPYGSLEGIGSG
CRAMFQLFDPEQRRRRAGGTLVVNDAWQGRVIDPMGRPIDGKGPLPPDGVPQKLHAPPPEAALRARLGPRIDLGVRVLNL
FATCREGQRLGLFAGSGVGKSTLMGMLARNTDCDVAVIALVGERGREVREFVEDDLGPEGLAKSVVVVATSDTSPLMRRE
AAYAATAAAEHFRDQGKSVLLLMDSVTRFCQALREIGLSSGEPPATRGYPPSVFAELPRLLERAGPGLPGPDGKAGQITA
MFSVLVEGDDHNEPVADAVRGILDGHVVMERRIAESGRYPAINVLRSLSRTVPGCNSAEENALTRDARADLSTWEEMQDM
VRLGAYRAGNDPKVDQAIRIAPAIEEILRQGRGEKATIAESFDALRAALSPPGTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-58 47
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-58 47
lscN AAO18044.1 LscN Virulence TTSS locus Protein 8e-58 47
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-56 47
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-57 47
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-57 47
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-57 47
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-57 47
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-56 47
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-56 47
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 5e-53 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 7e-51 44
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-51 44
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-51 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-52 44
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-51 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 6e-55 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-50 41
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 8e-51 41
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 6e-51 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_001601913.1 flagellum-specific ATP synthase VFG0390 Protein 4e-60 47
fliI YP_001601913.1 flagellum-specific ATP synthase VFG1254 Protein 2e-62 47
fliI YP_001601913.1 flagellum-specific ATP synthase VFG2499 Protein 2e-60 47
fliI YP_001601913.1 flagellum-specific ATP synthase VFG2144 Protein 2e-57 46
fliI YP_001601913.1 flagellum-specific ATP synthase VFG0192 Protein 7e-59 46
fliI YP_001601913.1 flagellum-specific ATP synthase VFG2331 Protein 6e-62 46
fliI YP_001601913.1 flagellum-specific ATP synthase VFG0048 Protein 1e-62 46
fliI YP_001601913.1 flagellum-specific ATP synthase VFG0515 Protein 9e-52 44