Gene Information

Name : GDI_1096 (GDI_1096)
Accession : YP_001601359.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_010125
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1091452 - 1092354 bp
Length : 903 bp
Strand : -
Note : -

DNA sequence :
ATGGCGTTCATCGACGCCCATCGCGAGGACTTGGGTATCGAGCCGATCTGCCGCGAACTGGCGATTGCCCCATCCTCCTA
TCACGAACATGCTGTCCGTCTGGCGGACCCCGCCAGGCGGCCTGCGCGTGCCCGGCGCGACGACGAACTGAAGGACGAGA
TCAAGCGGGTATATGACGCCAGTTCAAAGCTCTACGGGACGCGCAAAGTCTGGCATCAGATGCGCCGTGAAGGCATTGAG
GTGGCCAAATGCACCGTGGAACGCCTGATGCGTGCCATGGGCCTAGCCGGCATTCGGCGAGGGAAGAGGACGGTCACGAC
CATCAGCAATCCCAAGGCTCCGTGCCCGCTGGACAAGGTGAACCGCGCATTCCGCGTGAGCCGGCCGAATGCCCTGTGGG
TGGTCGATTTCACCTACGTCCACACATGGGCCGGCTTCGTCTATGTCGCCTTCGTGATCGACGCCTATGCCCGGCGCATC
GTCGGCTGGAAGGTCAGCACGTCAGCCACCGCCGGCTTCGTGCTGGACGCCCTGGAGCAGGCGATCCATGCCCGCAGGCC
CGGACCCGAGGATGGCTTGATCCACCATAGTGACAGGGGCGTCCAATACCTCGCCATGAATTACACCCAGCGCCTGGCCG
AGGCCGATCTGGTACCCTCGGTCGGCAGCGTCGGGGACTCCTATGACAATGCCCTGGCCGAGACCATCAACGGCCTCTAC
AAGGCCGAGGTCATCTGGCGGCAGCCTTCCTGGCCGACCGTATCGGCCGTGGAAATGGCAACATTGCGCTGGGTCGATTG
GTTCAATAACCATCGCCTCTTTGGCCCCATCGGCTATATCCCACCCGCCGAGGCCGAAGCCAACTACTATGCAGCCCTCG
AGATCATCGATATGGCTGCGTGA

Protein sequence :
MAFIDAHREDLGIEPICRELAIAPSSYHEHAVRLADPARRPARARRDDELKDEIKRVYDASSKLYGTRKVWHQMRREGIE
VAKCTVERLMRAMGLAGIRRGKRTVTTISNPKAPCPLDKVNRAFRVSRPNALWVVDFTYVHTWAGFVYVAFVIDAYARRI
VGWKVSTSATAGFVLDALEQAIHARRPGPEDGLIHHSDRGVQYLAMNYTQRLAEADLVPSVGSVGDSYDNALAETINGLY
KAEVIWRQPSWPTVSAVEMATLRWVDWFNNHRLFGPIGYIPPAEAEANYYAALEIIDMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 8e-63 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-68 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-51 59
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-67 59
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-67 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-67 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-67 59
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-67 59
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 4e-68 59
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-68 59
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-68 59
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-68 59
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 9e-68 59
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-67 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-68 59
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-68 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-68 59
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-68 59
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-66 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-49 44
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 6e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GDI_1096 YP_001601359.1 integrase VFG1602 Protein 3e-66 58