Gene Information

Name : ctrD (NMCC_0082)
Accession : YP_001598259.1
Strain : Neisseria meningitidis 053442
Genome accession: NC_010120
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 80240 - 80890 bp
Length : 651 bp
Strand : +
Note : Code: GM; COG: COG1134

DNA sequence : 
ATGATTTCAGTTGAACACGTTTCCAAACGCTATCTGACCCGCCAAGGTTGGCGGACAGTCTTGCACGATATTAGCTTCAA
AATGGAGAAGGGCGAGAAAATCGGTATTCTCGGCCGCAACGGTGCAGGTAAATCGACGCTCATCCGTTTGATCAGTGGCG
TTGAGCCGCCGACCACGGGTGAAATCAAGCGGACAATGAGTATTTCTTGGCCTTTGGCATTCTCCGGTGCGTTTCAAGGC
AGTCTGACCGGTATGGACAATTTGCGTTTCATCTGCCGGATTTACAATGTCGATATCGATTATGTGAAAGCGTTTACGGA
AGAATTTTCGGAGCTGGGGCAATATTTGTATGAGCCGGTGAAACGCTATTCTTCAGGTATGAAAGCGCGTTTGGCTTTTG
CGCTGTCGTTGGCGGTGGAGTTTGACTGTTACCTGATTGACGAAGTGATTGCAGTTGGTGACTCGCGTTTTGCCGATAAA
TGTAAGTACGAGTTGTTTGAAAAGCGCAAAGACCGTTCCATCATCTTGGTGTCGCACAGCCACAGCGCCATGAAGCAATA
TTGCGATAATGCGATGGTGCTGGAAAAAGGGCATATGTACCAGTTTGAAGATATGGACAAAGCCTACGAATATTATAATT
CGCTGCCTTAA

Protein sequence : 
MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGKSTLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQG
SLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 4e-100 100
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 9e-44 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-44 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrD YP_001598259.1 capsule polysaccharide export ATP-binding protein VFG0258 Protein 1e-100 100
ctrD YP_001598259.1 capsule polysaccharide export ATP-binding protein VFG0696 Protein 1e-85 82
ctrD YP_001598259.1 capsule polysaccharide export ATP-binding protein VFG2563 Protein 2e-63 59
ctrD YP_001598259.1 capsule polysaccharide export ATP-binding protein VFG1449 Protein 3e-44 48