Gene Information

Name : SPAB_03966 (SPAB_03966)
Accession : YP_001590130.1
Strain : Salmonella enterica SGSC4150; SPB7
Genome accession: NC_010102
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3301003 - 3301815 bp
Length : 813 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGATTACTTTTCCCTTTCATGTCGTTTCAGATCCATTTAATAAGGTAATCCTTAACAACTTCTTAAGGCAAAAAAAGAA
TCTTTTTTTCTGTACATCGCCTGCGGCGACAAGGTTAACTGACGGTAACGCGAGTTACCGCAAGGAAGAACAGATGCGAA
TTTTACTGGTAGAAGATGACACACTTATTGGCGATGGCATAAAAGCGGGCCTGAGTAAAATGGGTTTCAGCGTCGACTGG
TTTACCGAGGGACGCCCGGGCAAAGAGGCGCTTTACAGCGCGCCTTATGATGCGGTTATTTTAGATTTGACGCTGCCAGG
CATGGACGGACGGGATATTTTGCGCGAATGGCGCGAAAAGGGTAAACAGGAACCGGTACTGATCCTGACGGCGCGCGACG
CGTTAGCAGAGCGCGTCGAGGGGCTACGTCTGGGCGCCGATGACTATTTATGTAAACCTTTCGCGCTCATTGAGGTCGCC
GCCCGTCTGGAGGCGCTGGTACGCCGCGCCAGCGGTCAGGCCAGTAGCGAATTGCGCCACGGCCAGGTGACGCTCAATCC
AGGCAATCTCGTCGCGACGCTTGCCGGCGAACCACTGGCCTTAAAACCAAAAGAGTTCGCATTGCTGGAACTCTTACTGC
GCAACAAAGGTCGCGTGCTGCCGCGCAAGCTTATTGAAGAGAAGCTGTATAACTGGGATGACGACGTGTCCAGCAATGCA
GTGGAAGTCCATGTTCATCATTTACGCCGCAAGCTCGGCAGCGAATTTATTCGCACCGTACACGGCATCGGCTACACCCT
GGGTGACGCATGA

Protein sequence : 
MITFPFHVVSDPFNKVILNNFLRQKKNLFFCTSPAATRLTDGNASYRKEEQMRILLVEDDTLIGDGIKAGLSKMGFSVDW
FTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA
ARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYNWDDDVSSNA
VEVHVHHLRRKLGSEFIRTVHGIGYTLGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 3e-34 46
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 8e-26 43
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 4e-30 43
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 5e-28 41
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 5e-28 41
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 4e-30 41
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 7e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 1e-34 47
SPAB_03966 YP_001590130.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 5e-26 41