Gene Information

Name : SPAB_03412 (SPAB_03412)
Accession : YP_001589593.1
Strain : Salmonella enterica SGSC4150; SPB7
Genome accession: NC_010102
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2858224 - 2859417 bp
Length : 1194 bp
Strand : +
Note : COG: COG0582 Integrase; Psort location: nuclear, score: 23

DNA sequence : 
ATGGCGCGCATCACACGCCCCCTCACCAACAACGAAATACTCAAAGCTAAACCCCGTGAAAAAGACTTCACACTTCATGA
TGGGGATGGCCTGTTCTTGCTCGTCAAAACCTCTGGTAAAAAACTCTGGCGATTCCGCTATCAGCGTCCGGTCAGTGGCA
GCCGAACCAATTTAAGTCTCGGCTCATACCCTGCACTTACACTTGCAGCAGTTCGTCAGATTCGCGACCAACACTTAACC
ACCATTGCCCAAGGCATAGATCCACAACAGCAACAAGAACAGGCGTCAGAAAAACGTCAGATTGAGCTGGATAGCATTTT
CTCAACTGTGGCCGCCAACTGGTTCAAAATGAAGAGCAAAAGCGTCACAGAAGATTACGCGAAAGATATTTGGCGCTCAT
TAGAAAAGGATGTTTTTCCTGCTATCGGCGCAATACCTGTTCAGGAGCTTAAAGCCAGAACAATTGTTGAAGCACTGGAA
CCAATAAAAGCGCGCGGGGCGTTGGAGACAGTTCGCCGTTTGATACAACGTGTTAACGAAATAATGATTTACGCAGTCAA
CACTGGCCTAATTGATGCTAATCCGGCATCTGGTGTTGGTATGGCTTTTGAAAGACCCAAAAAGCAAAACATGCCTACGC
TGCGGCCAGAAGAATTGCCAAATTTAATGCGTTCTTTAGTTATGTCTAATTTGTCGATTCCTACTCGCTGTCTGATTGAG
TGGCAACTCCTGACTCTTGTACGTCCTTCTGAGGCTTCTGGTACTCGGTGGGCAGAGATAGATCTCGAGGCAAAACTCTG
GACAATTCCAGCCGAAAGAATGAAAGCCAAACGTGAACATATAGTACCTCTTTCATCTCAAGCATTAGATATTCTTGAAG
TGATGAAACCTATCAGTGCTCACCGAGAACATATTTTCCCCAGCAGGAACGATCCGAAACAACCTATGAACAGTCAAACT
GCTAATGCTGCACTAAAGCGAATCGGGTACGCGGGGAAACTTGTTGCGCACGGAATGCGTTCAATAGCCAGCACCGCGAT
GAATGAAACAGGATTTAATTCTGACGTCATTGAGTCTGCTTTAGCTCACATTGAGAAAAATGAAGTAAGGCGTGCCTACA
ATAGAGCATTATATTTGGAACAAAGGAAAGAGTTAATGCAGTGGTGGGGTAACTTCATAAACAAAGCCATGTGA

Protein sequence : 
MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPVSGSRTNLSLGSYPALTLAAVRQIRDQHLT
TIAQGIDPQQQQEQASEKRQIELDSIFSTVAANWFKMKSKSVTEDYAKDIWRSLEKDVFPAIGAIPVQELKARTIVEALE
PIKARGALETVRRLIQRVNEIMIYAVNTGLIDANPASGVGMAFERPKKQNMPTLRPEELPNLMRSLVMSNLSIPTRCLIE
WQLLTLVRPSEASGTRWAEIDLEAKLWTIPAERMKAKREHIVPLSSQALDILEVMKPISAHREHIFPSRNDPKQPMNSQT
ANAALKRIGYAGKLVAHGMRSIASTAMNETGFNSDVIESALAHIEKNEVRRAYNRALYLEQRKELMQWWGNFINKAM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 3e-106 54
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 3e-106 54
int AAK20803.1 integrase Not tested VPI Protein 3e-106 54
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 3e-106 54
unnamed AAA82714.1 integrase Not tested VPI Protein 3e-106 54
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 7e-103 50
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 6e-92 48
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 6e-92 48
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 3e-92 48
int CAC39282.1 integrase Not tested LPA Protein 3e-72 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-72 41
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 5e-73 41
int AAD44730.1 Int Not tested SHI-2 Protein 4e-73 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPAB_03412 YP_001589593.1 hypothetical protein VFG1092 Protein 3e-92 48