Gene Information

Name : SPAB_01138 (SPAB_01138)
Accession : YP_001587388.1
Strain : Salmonella enterica SGSC4150; SPB7
Genome accession: NC_010102
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1024961 - 1026223 bp
Length : 1263 bp
Strand : -
Note : COG: COG0582 Integrase; Psort location: nuclear, score: 23

DNA sequence :
ATGTCCCTGTCCGACGCGAAAATCCGCAGTATCAAGCCTTCTGATAAACCCTTTAAACTGACCGATTCTCAGGGTCTGTA
TCTGCTTGTCAATCCGGGCGGTTCACGCCTCTGGTATCTCAAATATCGCTTCAACCGAAAAGAATCCCGAATTGCCTTAG
GCGCCTATCCGCAGGTCTCGCTTTCCGACGCCCGCCAACAGCGCGACGGTATCCGTAAACTACTGGCGCAGAATATCAAT
CCAGCACAACAACGCATGACTGAAAAAGCCGCCGCGTCACCGGAAAAATGCTTTGAGGCCGTTGCGGTGGCATGGCACAA
AACCAATAAAAAATGGTCGGCTGACTATGCAGAGCGCATTCTTGCCAGTATGAAAAATCATATCTTTCCGGCAATTGGTC
ACATGCCCGTCACGATGCTGAAAACGCAACATTTCACGGCGTTACTGAAAGTTATCGAGGATAAAGGCTTTCTGGAAGTC
GCGTCCCGTACCCGGCAGCAACTCTGCAACATCATGCGTTACGCCGTGCAGCAGGGGCTGACCGAAAACAATCCGGCGCA
GCATCTGGAAGGCGTCACCGCGCCGCCGGTTAAGAATCACTATCCCGCCCTGCCGCTGGAGCGGTTGCCCGAATTGTTTG
AGCGCATTGGTGATTATCAGCAGGGACGGCAGCTTACAAGGCTGGCGGTGGTGCTGACACTCCATCTGTTTATTCGCTCC
AGTGAACTGCGCTTCGCCCGCTGGAGCGAGATTGATTTCAGACACAAAATCTGGACCATCCCCGCCACACGGGAAACGAT
TGAGAAAGTTCGTTTCTCTGGCCGTGGCGCAAAAATGCGTACTCCGCACATTGTGCCGCTTTCCTGGCAGTCAATTGCTA
TTCTGAAGCAGATACAAGAGATTTCCGGCCATCTGGAACTGGTGTTCCCCGGCGACCATAACCCGTATAAGCCGATGAGC
GAAAATACCATCAACCGGGCGCTGCGTCTGATGGGCTATGATACCAAAGCTGACGTCTGCGGACATGGCTTCCGGGCAAT
GGCCTGTAGCGCACTGGTGGAATCCGAACTCTGGTCGCGGGATGCCGTGGAGAGGCAGATGAGCCATCAGGAGCGGAACA
GCGTGCGGGCGGCGTACATTCACCGCGCCGAGCACCTCGACGCCCGTAAAGCCATGATGCAGTGGTGGTCGGACTATCTG
GATGTGAGCCGCGAAGGATACGTTGCGCCGTACATTTATGCGCGGCGGCATAAGGCGGCCTGA

Protein sequence :
MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVSLSDARQQRDGIRKLLAQNIN
PAQQRMTEKAAASPEKCFEAVAVAWHKTNKKWSADYAERILASMKNHIFPAIGHMPVTMLKTQHFTALLKVIEDKGFLEV
ASRTRQQLCNIMRYAVQQGLTENNPAQHLEGVTAPPVKNHYPALPLERLPELFERIGDYQQGRQLTRLAVVLTLHLFIRS
SELRFARWSEIDFRHKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSWQSIAILKQIQEISGHLELVFPGDHNPYKPMS
ENTINRALRLMGYDTKADVCGHGFRAMACSALVESELWSRDAVERQMSHQERNSVRAAYIHRAEHLDARKAMMQWWSDYL
DVSREGYVAPYIYARRHKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-151 74
int2 NP_993013.1 integrase Not tested HPI Protein 2e-151 74
int CAA21384.1 - Not tested HPI Protein 2e-151 74
int CAA08754.1 integrase Not tested HPI Protein 5e-152 74
int CAB59974.1 integrase Not tested HPI Protein 5e-153 74
int YP_002346908.1 integrase Not tested HPI Protein 2e-151 74
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-110 72
unnamed AAD17660.1 unknown Not tested HPI Protein 6e-149 72
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-119 72
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-120 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-120 61
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-125 60
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-125 60
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-106 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-111 54
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-111 54
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-111 54
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-111 54
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-111 54
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-111 54
int AAK00456.1 Int Not tested SHI-1 Protein 3e-102 54
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-113 54
int AAL51003.1 CP4-like integrase Not tested LEE Protein 8e-112 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-112 54
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-110 54
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-112 54
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-112 54
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-112 54
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-112 54
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-111 54
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-112 54
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-112 54
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-112 54
int CAC81896.1 integrase Not tested LEE II Protein 3e-103 54
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-113 54
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-99 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-94 49
int AAD44730.1 Int Not tested SHI-2 Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SPAB_01138 YP_001587388.1 hypothetical protein VFG1536 Protein 6e-107 56
SPAB_01138 YP_001587388.1 hypothetical protein VFG0626 Protein 7e-112 54
SPAB_01138 YP_001587388.1 hypothetical protein VFG1693 Protein 1e-111 54