Gene Information

Name : Nmar_0329 (Nmar_0329)
Accession : YP_001581663.1
Strain : Nitrosopumilus maritimus SCM1
Genome accession: NC_010085
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 289894 - 290664 bp
Length : 771 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related

DNA sequence : 
ATGATGGAGCAAAAATCGGTTCGAAGAAACATGAATGACGAACAAACATTTCCAATTGAAATCAAACATCTTTCTGTTAC
CTATCGTACTGAACCTGCATTATGGAATTTAGATCTAAATCTACCTGAAGGACAATTAATTGCAATTGTTGGTCCAAATG
GTGCAGGTAAATCTACTTTGATAAAAGCAGTAATGGGATTGGTTCCAATCACTGCAGGCAAAGTAAGCATTTATGGAAAA
CAATATTCAAAACAAAGAAGCAAAGTGGCGTATGTTCCACAACGTGGAACTGTTGATTGGGATTTCCCTACTGATGCATT
AGATGTTGTAGAGATGGGGCTTTATGGAAAACTTGGATGGTTACGTCGTCCTAATTCTCAAACAAAAGAGAAAGCAAGAG
AATGTTTGGAAAAAGTTGGGTTAAAGGATTATGCAGATAGACAAATTGGTCAGTTGTCTGGAGGCCAACAACAAAGAGTA
TTCCTTGCAAGAGCTTTGGCCCAGGATCCTCAAATTTATCTTATGGATGAGCCATTAAACGGAGTTGATGCAATTACAGA
AGAGACAATACTCTCAATTCTTGAGGATCTAAAAAAAGAAGGAAAGACAATTGTGATGGTTCATCATGATCTGCAAACTG
TGGACAAGTATTTTGATTGGGTTGTAATGCTAAATAGGAATCTGATATCTGCTGGACCAATAAAAGAAGTATTTACAAAA
GAAAATTTGGATATTGCGTATCAAGAAAAACAACGCATGTCTATTCAATAA

Protein sequence : 
MMEQKSVRRNMNDEQTFPIEIKHLSVTYRTEPALWNLDLNLPEGQLIAIVGPNGAGKSTLIKAVMGLVPITAGKVSIYGK
QYSKQRSKVAYVPQRGTVDWDFPTDALDVVEMGLYGKLGWLRRPNSQTKEKARECLEKVGLKDYADRQIGQLSGGQQQRV
FLARALAQDPQIYLMDEPLNGVDAITEETILSILEDLKKEGKTIVMVHHDLQTVDKYFDWVVMLNRNLISAGPIKEVFTK
ENLDIAYQEKQRMSIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-47 45
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-47 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 3e-49 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 4e-49 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-49 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-49 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-49 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nmar_0329 YP_001581663.1 ABC transporter BAC0400 Protein 7e-70 54
Nmar_0329 YP_001581663.1 ABC transporter BAC0350 Protein 2e-49 44
Nmar_0329 YP_001581663.1 ABC transporter BAC0440 Protein 2e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nmar_0329 YP_001581663.1 ABC transporter VFG0526 Protein 2e-49 44