Gene Information

Name : lhv_1036 (lhv_1036)
Accession : YP_001577389.1
Strain : Lactobacillus helveticus DPC 4571
Genome accession: NC_010080
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3666
EC number : -
Position : 1010750 - 1012504 bp
Length : 1755 bp
Strand : +
Note : -

DNA sequence :
ATGTATCAAAATTATACCACAGGCCAAACTGCTTTAACACTTAATCTGGACTTTACTATCCCTAACAATCATTTAGCCAA
CACAATCAGCTGCTTCGTTGATTCTATTCCGGAAGATGTTTTGCTGGGTGATACCGCTAAAACTGGACGGCCTGCTTATC
ATCCAGCCATGATGCTTAAGATTTTGCTTTTTGCATATTCCAGAAGAGTATTTTCAGGCAGAAAGATTGAATTAATGCTG
GAAGAAAACCTGCCTATGATGGTATTGGCAGAGCACCAAAAGATTTCATATCATACCATCAATAACTTTAGGTCTAGTGA
TCACGCCAATGAACTGGTTAAGAAAAGCTTCCTCTACTTTACCAATTTGTTAGAAGCAGAAGGTCTAATCAATGAGGGCG
CCATCTTTATTGATGGTACCAAGATTGAAGCTGACGCTAATCGCTATACTTTTGTTTGGCGCAAGGCAGCTGAAAAGTTC
CATGAAAAGCTCAAAGGCCAAGCAGTTGAACTTTATGATGAACTGATTGCCAAAGAAGTAGTCAAAGCAATGGCTCAAGA
AAAGGTACAAACCAGTCAAGGCTTAGAAGAACTAGCGCAAGAAACAGAAGATGAGATTGAAAAGCTGACTAAAGAAATTG
AGCAAGAACCTAAGGCAATTCCTGGCGGCTCGCTTAGAAAAGCAAGAAGACGTGGTCTTAAAAAGCTGCTTCATAGGCTA
AAAAAAGACTATGTTCCTCGCATGAAGAAATATGAAGAAGCAGAAGAAATCTTTGCTGGACGCAACAGCTATTCCAAGAC
TGATCATGATGCGACTTTTATGCATATGAAGGAAGACCATATGAAGAATGGTCAGCTGAAGCCAGGCTACAATATTCAAG
CCGCTACAACGGATCAATATGTAGTCGGCTTTGCCTTGTACCCTAACCCAACTGACTTTAAGACATTAGAACCATTTTTA
AAGCAGATGCCAATATTAGATAAGTTCGATAAGATTGTCGCCGATGCTGGTTATGGCAGCGAGTACAACTATTCTATGCT
GGAGGAAGAATATCCAGACAAGAAGTACTATATTCCCTACACTATGTATGAAAAGGAAAAGACCAGAAAATATCGCAACG
ATCCGACTAAGCTGGCTAACTGGTTCTATGATGAAAAAGATGATTACTATCTTGATCAAAATGGCGTCAGGTTCAACTTT
AAGTATTATAGTCAGCGTAAAGACCGCTCGACTGGTCAGGTTCGTGATTTTAAGGTCTATGAAGCAGATGAATTCCAACT
AACGCCAGAATTAGAACGCCTAGCCAAAACCAAAAGTGGTCGTCAACGCCAAGTACGCTATAATCCTAACTGGCAGTATT
TAAAGGAAAAAGCCAAAGAAGTTCTTCAGAGTCCTGAAGGCAGGCACATCTACAGCATGAGAAAGTATGATGTGGAGCCA
ATTTTTGTACATTTGAAGAACGTTTTTGGCATGCGTCGAACTCATTTAAGAGGCAAAAAGAAGGTTGAAACTGATGTTGG
CATAGCCTTCATGATGATGAATTTAAGCAAATATTGGAACAGAAGATGGTCAAAAGACCAATTTTCTTTGTTCAAAAATA
AAAATAGAGAGAAAAAACGACCAATCAAACTCAAATTAAGAGTTGAATTGATCGTTTTTCAGTATCTAAGGGTTGGTTAT
TTCCCAGACACTTTTAAATATGTTCTGATGAATGTACTGGGAGAAAAGATAGGTGAAAGAAATGATAAATTATAG

Protein sequence :
MYQNYTTGQTALTLNLDFTIPNNHLANTISCFVDSIPEDVLLGDTAKTGRPAYHPAMMLKILLFAYSRRVFSGRKIELML
EENLPMMVLAEHQKISYHTINNFRSSDHANELVKKSFLYFTNLLEAEGLINEGAIFIDGTKIEADANRYTFVWRKAAEKF
HEKLKGQAVELYDELIAKEVVKAMAQEKVQTSQGLEELAQETEDEIEKLTKEIEQEPKAIPGGSLRKARRRGLKKLLHRL
KKDYVPRMKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTDQYVVGFALYPNPTDFKTLEPFL
KQMPILDKFDKIVADAGYGSEYNYSMLEEEYPDKKYYIPYTMYEKEKTRKYRNDPTKLANWFYDEKDDYYLDQNGVRFNF
KYYSQRKDRSTGQVRDFKVYEADEFQLTPELERLAKTKSGRQRQVRYNPNWQYLKEKAKEVLQSPEGRHIYSMRKYDVEP
IFVHLKNVFGMRRTHLRGKKKVETDVGIAFMMMNLSKYWNRRWSKDQFSLFKNKNREKKRPIKLKLRVELIVFQYLRVGY
FPDTFKYVLMNVLGEKIGERNDKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp YP_254534.1 IS1272 transposase Not tested ¥ðSh2 Protein 3e-72 41
SACOL0036 YP_184947.1 IS1272 transposase Not tested Type-I SCCmec Protein 2e-77 41
SAMSHR1132_00350 YP_005324559.1 putative transposase Not tested Type-IIIinv SCCmec Protein 2e-77 41
MW0034 NP_644849.1 hypothetical protein Not tested Type-IV SCCmec Protein 2e-77 41
unnamed BAA86649.1 hypothetical protein Not tested Type-I SCCmec Protein 1e-77 41
SAUSA300_0034 YP_492755.1 IS1272, transposase Not tested Type-IV SCCmec Protein 7e-75 41