|
Name : lhv_0932 (lhv_0932) Accession : YP_001577326.1 Strain : Lactobacillus helveticus DPC 4571 Genome accession: NC_010080 Putative virulence/resistance : Unknown Product : transposase ISLhe63 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 916184 - 917887 bp Length : 1704 bp Strand : - Note : - DNA sequence : ATGTATCAAAATTATACCACAGGCCAAACTGCTTTAACACTTAATCTGGACTTTACTATCCCTAACAATCATTTAGCCAA CACAATCAGCTGCTTCGTTGATTCTATTCCGGAAGATGTTTTGCTGGGTGATACCCCTAAAACTGGACGGCCTGCTTATC ATCCAGCTATGATGCTTAAGATTTTGCTTTTTGCATATTCCAGAAGAGTATTTTCAGGCAGAAAGATTGAATTAATGCTG GAAGAAAACCTGCCTATGATGGTATTGGCAGAGCACCAAAAGATTTCATATCATACCATCAATAACTTTAGGTCTAGTGA TCACGCCAATGAACTGGTTAAGAAAAGCTTCCTCTACTTTACCAATTTGTTAGAAGCAGAAGGTCTAATCAATGAGGGCG CCATCTTTATTGATGGTACCAAGATTGAAGCTGACGCTAATCGCTATACTTTTGTTTGGCGCAAGGCAGCTGAAAAGTTC CATGAAAAGCTCAAAGGCCAAGCAGATGAGCTTTATGATGAACTGATTGCCAAAGAAGTAGTCAAAGCAATGGCTCAAGA AAAGGTACAAACCAGTCAAGGCTTAGAAGAACTAGCGCAAGAAACAGAAGATGAGATTGAAAAGCTGACTAAAGAAATTG AGCAAGAGCCTAAGGCAATTCCTGGCGGCTCGCTTAGAAAAGCAAGAAGACGTGGTCTTAAAAAGCTGCTTCATAGGCTA AAAAAAGACTATGTTCCTCGCATGAAGAAATATGAAGAAGCAGAAGAAATCTTTGCTGGACGCAACAGCTATTCCAAGAC TGATCATGATGCGACTTTTATGCATATGAAGGAAGACCATATGAAGAATGGTCAGCTGAAGCCAGGCTACAATATTCAAG CCGCTACAACGGATCAATATGTAGTCGGCTTTGCCTTGTACCCTAACCCAACTGACTTTAAGACATTAGAACCATTTTTA AAGCAGATGCCAATATTAGATAAGTTCGATAAGATTGTCGCCGATGCTGGTTATGGCAGCGAGTACAACTATTCTATGCT AGAGAAAGAATATCCAGACAAGAAGTACTATATTCCCTACACTATGTATGAGAAGGAAAAGACCAGAAAATATCGCAACG ATCCGACTAAGCTGGCTAACTGGTTCTATGATGAAAAAGATGATTACTATCTTGATCAAAATGGCGTCAGGTTCAACTTT AAGTATTATAGTCAGCGTAAAGACCGCTCGACTGGTCAGGTTCGTGATTTTAAGGTCTATGAAGCAGATGAATTCCAACT AACGCCAGAATTAGAACGCCTAGCCAAAACCAAAAGTGGTCGTCAACGCCAAGTACGCTATAATCCTAACTGGCAGTATT TAAAGGAAAAAGCCAAAGAAGTTCTTCAGAGTCCTGAAGGCAGGCACATCTACAGCATGAGAAAGTATGATGTGGAGCCA ATTTTTGGACATTTGAAGAACGTTTTTGGCATGCGTCGAACTCATTTAAGAGGCAAAAAGAAGGTTGAAACTGATGTTGG CATAGCCTTCATGATGATGAATTTAAGCAAATATTGGAACAGAAGATGGTCAAAAGACCAATTTTCTTTGTTCAAAAATA AAAATAGAGAGAAAAAACGACCAATCAAACTCAAATTAAGAGTTGAATTGATCGTTTTTCAGTATCTAAGGGTTGGTTAT TTCCCAGACACTTTTTCTGGTTAA Protein sequence : MYQNYTTGQTALTLNLDFTIPNNHLANTISCFVDSIPEDVLLGDTPKTGRPAYHPAMMLKILLFAYSRRVFSGRKIELML EENLPMMVLAEHQKISYHTINNFRSSDHANELVKKSFLYFTNLLEAEGLINEGAIFIDGTKIEADANRYTFVWRKAAEKF HEKLKGQADELYDELIAKEVVKAMAQEKVQTSQGLEELAQETEDEIEKLTKEIEQEPKAIPGGSLRKARRRGLKKLLHRL KKDYVPRMKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTDQYVVGFALYPNPTDFKTLEPFL KQMPILDKFDKIVADAGYGSEYNYSMLEKEYPDKKYYIPYTMYEKEKTRKYRNDPTKLANWFYDEKDDYYLDQNGVRFNF KYYSQRKDRSTGQVRDFKVYEADEFQLTPELERLAKTKSGRQRQVRYNPNWQYLKEKAKEVLQSPEGRHIYSMRKYDVEP IFGHLKNVFGMRRTHLRGKKKVETDVGIAFMMMNLSKYWNRRWSKDQFSLFKNKNREKKRPIKLKLRVELIVFQYLRVGY FPDTFSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 5e-78 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 5e-78 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 4e-78 | 42 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 5e-78 | 42 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 4e-72 | 41 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 1e-75 | 41 |
