Gene Information

Name : lhv_0790 (lhv_0790)
Accession : YP_001577210.1
Strain : Lactobacillus helveticus DPC 4571
Genome accession: NC_010080
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 770281 - 771003 bp
Length : 723 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTTTGAGAATCTTAATGGTTGAAGATGATAATTCCGTCGCTGAAATGATGGGAATGTTTTTCAAAAAAGAAGGTTG
GCAGCAAGATATCGCTGTCGACGGTGTCGAAGCCGTCGATATGTTTAAAGAAAATGCAGATAAGTATGATTTGATTACAT
TAGATTTGAATTTGCCTAAAAAAGATGGTATTCAAGTTGCTAAGGAAGTAAGAGCTATTTCTCCTACTGTTCCGATTATT
ATGCTTACTGCTAGGGGCAGTGAATCAGATCAAGTTCTAGGATTAGGAATTGGTGCTGATGAGTATGTGACTAAGCCATT
TAGTCCAATCGCCTTAATTGCCCGCATCAAGGCACTTCATCGTCGCGTGATGATGGAAGAAGACGTTCAAACACAAGAAA
ATAATAATCAAGAATATGAAATTCAGACTGCTCATCTAAAGATTTCTAAGGATAGACGAGAAGTTTTATTTGATGACCAA
CTAGTTGTTGATTTAACGCCGAAGGAATTTGATTTGTTATATACAATGGCGCAAAAGCCTAAGCAAGTCTTTTCGCGTGA
TCAATTATTAGATCTGGTCTGGGGATATGAGTATTATGGTGAAGAACGAACTGTTGACGCCCATATTAAAAAATTGCGCC
AAAAACTAGAAAAAGTTGGTGCCAAGGTTATCCAAACAGTCTGGGGCGTTGGCTATAAGTTTGACGATTCGCAGGTCAAA
TAA

Protein sequence : 
MSLRILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGIQVAKEVRAISPTVPII
MLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQ
LVVDLTPKEFDLLYTMAQKPKQVFSRDQLLDLVWGYEYYGEERTVDAHIKKLRQKLEKVGAKVIQTVWGVGYKFDDSQVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-34 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lhv_0790 YP_001577210.1 response regulator HE999704.1.gene2815. Protein 3e-41 44
lhv_0790 YP_001577210.1 response regulator NC_012469.1.7685629. Protein 4e-40 43
lhv_0790 YP_001577210.1 response regulator CP001918.1.gene5135. Protein 2e-25 43
lhv_0790 YP_001577210.1 response regulator NC_002952.2859905.p0 Protein 6e-41 42
lhv_0790 YP_001577210.1 response regulator NC_009641.5332272.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_013450.8614421.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_007793.3914279.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_002745.1124361.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_009782.5559369.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_002951.3237708.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_007622.3794472.p0 Protein 7e-41 42
lhv_0790 YP_001577210.1 response regulator NC_003923.1003749.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator NC_002758.1121668.p0 Protein 5e-41 42
lhv_0790 YP_001577210.1 response regulator AE000516.2.gene3505. Protein 8e-36 42
lhv_0790 YP_001577210.1 response regulator AF155139.2.orf0.gene Protein 2e-41 41
lhv_0790 YP_001577210.1 response regulator FJ349556.1.orf0.gene Protein 2e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lhv_0790 YP_001577210.1 response regulator VFG1563 Protein 5e-35 42
lhv_0790 YP_001577210.1 response regulator VFG1702 Protein 5e-35 42