Gene Information

Name : lhv_0672 (lhv_0672)
Accession : YP_001577111.1
Strain : Lactobacillus helveticus DPC 4571
Genome accession: NC_010080
Putative virulence/resistance : Unknown
Product : transposase ORF_A
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 652890 - 653237 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence :
ATGATTAACCTTTATGACTTGGGGCAGGTCTACATTGTTTGTGGTCGAACAGATATGAGACGCGGAATCGATGGCCTGGC
TGCCATAGTTAAAGATGAATTTGATTTGGATCCTTTTTCTGGCCGAGTCTTTATCTTCTGCGGTGGCAGTCGCGACCGTT
TCAAGGCTTTATATTGGGATGGTCAGGGATATTGGCTGCTTTATAAAAGATTTGAAAATGGCAAGATGATCTGGCCTAAC
AATCAGGATGAAGTCAAAGCTTTGTCAAAAGAACAAGTAGATTGGTTAATGAAGGGCTTTTCTATTGAGCCTGGGATAAA
AGCAACGAACGCACGCAATTTCTATTGA

Protein sequence :
MINLYDLGQVYIVCGRTDMRRGIDGLAAIVKDEFDLDPFSGRVFIFCGGSRDRFKALYWDGQGYWLLYKRFENGKMIWPN
NQDEVKALSKEQVDWLMKGFSIEPGIKATNARNFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 2e-08 46
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-10 42
unnamed AAL99258.1 unknown Not tested LEE Protein 4e-10 42
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 6e-10 42
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 4e-10 42
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 6e-10 42
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 6e-10 42
unnamed AAC31493.1 L0014 Not tested LEE Protein 4e-10 42
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 4e-10 42
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 3e-09 42
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 3e-09 42
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 1e-14 41
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-09 41
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 1e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lhv_0672 YP_001577111.1 transposase ORF_A VFG1517 Protein 6e-09 46
lhv_0672 YP_001577111.1 transposase ORF_A VFG1709 Protein 2e-10 42
lhv_0672 YP_001577111.1 transposase ORF_A VFG0792 Protein 2e-10 42
lhv_0672 YP_001577111.1 transposase ORF_A VFG1698 Protein 4e-10 41