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Name : lhv_0301 (lhv_0301) Accession : YP_001576819.1 Strain : Lactobacillus helveticus DPC 4571 Genome accession: NC_010080 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 308436 - 310916 bp Length : 2481 bp Strand : + Note : - DNA sequence : ATGGAAAATTCATATAGTAAAAGCGCTAATCAAGTGTTAGAAATTGCGCGTGAACAAGCACAGGAGTTTCATCATCGGCT AATTGGTACTGAGCATGTGTTATTGGCTATGGTGATTGAAACTGAAGGTGAAGCAGGAAAAATCTTGCGCTCATGGGGAT TGACGCCAACTGCCGTACGAGAAGAGATTGAACGTTACACAGGCTATGGTTCAGCAGCTAAGTCAAGCTACATGGAAATG TCACCTCGTTTAAGCTTAGCGTTAGATTATGCCAAAAGACAGGCTGACCAAGGTGGATATAAAGAAATTGAAACTAATCA TGTTTTGCTAGGAATAACTGCTAGTGAACAGGTTTTGTCAGCCATGATTTTAAAGAACTTAAATGTTGATATTGGCCGTT TGCGTCAAGATATTAATGACAGCTTGGATCAAGAACAAGACTTTGGCGATTCAGCAAGCTGGTTAGGCAATAGCAATACC GCTACTAGCCAAAAGAAACGTAAAAATAGTACTACACCAACTCTAGATAAAGTAGCGGTTAATTTAAATCAACGCACCCG TGAAGGTGGAATTGATCCAGTTATTGGCCGTGAAAAAGAAATTAAGCGAGTTATTCAAATTTTATCTCGTCGTACTAAGA ACAATCCAATTTTGGTAGGCGAACCTGGTGTAGGTAAAACTGCGGTCGCCGAAGCAATTGCTACAGAAATTGTTAATAAA AAAGTTCCAGAAGGCTTGCTTGATAAGCGAGTAATGGCTCTTAACATGGGCAGTTTAGTAGCAGGCACTAAGTATCGTGG TGAATTTGAAGATAGAATGAAAAAGATTTTGGATGAAATTGCCAAAGACGGTAAAGTCATTCTATTTGTCGATGAAATGC ATACTTTGATTGGTGCTGGTGGTGCTGAAGGGGCAATTGATGCTTCTAATATTTTGAAACCTTCACTTGCGCGCGGCGAT ATTCAAATGATTGGTGCTACTACATTTGATGAATATCAAAAGTACATTGAAAAGGATCAAGCATTGGCTCGTCGTTTCCA ACAAGTACGTTTGAATGAACCTACTAAGAAGGATACGTTAGCTATTTTAAAGGGACTTAGACCTAAGTATGAAAAGTTCC ACCATGTGACTATTTCAGATGCTAGTCTTGAGGATGCTGTTGATTTATCTAGTCGGTACATTACTAATCGGTTCTTGCCA GATAAGGCGATTGATTTGGTAGATGAGGCTAGTGCAGCAGTTAAAATTAGAACTAATGTTGGTTCAAACAAAGATTTAGT TCAAATTAATGAAAAGATAAAGAATATTATTGAACAAAAGAATGAAGCAGCTGCGAGTCAGAACTTTGTTAAAGCAGCTC AACTTCAAGAAGCACAAAACAATTTGCAAATGCAGCGAGAAGAAATGGAGAATGCATTGCAAGTTAAGGCTAGTGCTGAG GCTGTTGTTGGCCCTGAAGATATTGCCGAGGTAGTATCTGACTGGACAGGTGTACCTGTTACTCAGATGAAGAGGGATGA AAGTCGCCAATTAGCTAACTTAGAGAGCATTTTGCATAAACGCGTGATTGGGCAAGATAAGGCTGTTTCAGCTGTAGCTC GTGCAATTCATCGTAGCAGAAGCGGTATTAAGGATGAGCGCCGTCCAATTGGATCATTCTTGTTCTTAGGGCCAACAGGT GTAGGTAAGACTGAATTAGCTAAATCAGTTGCAGCAGCAATGTTTGGGTCAGAAGATAATTTGATCAGATTAGATATGTC TGAGTACATGGATCAAATTGCCTCAAGCAAGTTAATTGGCTCAGCTCCTGGTTATGTTGGCTATGAAGAGGGCGGACAAC TTTCTGAACAAGTTCGTCGTCATCCATATTCAGTTGTTTTGCTTGATGAAGTGGAAAAAGCTCATCCTGATGTATTTAAT TTGCTTTTGCAAGTTTTGGATGAAGGATTTTTGACAGATTCTAAAGGCAGAAAAGTCGACTTTAGAAATACAATCATCAT TATGACTTCTAATTTGGGTTCACGTACGTTATTTGACAGCAAGGCTGTAGGTTTCAATGCTGATAAGGTTGACCAAGCTA AAGTAAGACAAGTTAAAGTTCAACAGGCAATTAAGCAATTCTTCCGTCCGGAATTTTTGAACCGAATTGATGAAACGATT ATCTTTGATGAATTAACTAAGAAGCAGTTGCGGGACATTGTAACTTTACTTACTCACAAGTTGGTAGTTCGTTTGCAAAA GAAGGGAATTACGCTTAGGATTTCCCGTGCCGCTTTGGATAAAATTGTTAAAGATGGTTATGACCCTGAAAATGGTGCTC GTCCACTTAGAAGAGCAATCCAAAATGATATCGAAGATAAATTAGCAGAAATGTTGATTACAGGTGAAGTAAAAGCAAAC GACACTTTGAAAATTGGTAGTCAACATGGTCATTTGAAATTTGATGTTGTGCCAGAGAAAAAACTGGTGAAAACTAAGTA A Protein sequence : MENSYSKSANQVLEIAREQAQEFHHRLIGTEHVLLAMVIETEGEAGKILRSWGLTPTAVREEIERYTGYGSAAKSSYMEM SPRLSLALDYAKRQADQGGYKEIETNHVLLGITASEQVLSAMILKNLNVDIGRLRQDINDSLDQEQDFGDSASWLGNSNT ATSQKKRKNSTTPTLDKVAVNLNQRTREGGIDPVIGREKEIKRVIQILSRRTKNNPILVGEPGVGKTAVAEAIATEIVNK KVPEGLLDKRVMALNMGSLVAGTKYRGEFEDRMKKILDEIAKDGKVILFVDEMHTLIGAGGAEGAIDASNILKPSLARGD IQMIGATTFDEYQKYIEKDQALARRFQQVRLNEPTKKDTLAILKGLRPKYEKFHHVTISDASLEDAVDLSSRYITNRFLP DKAIDLVDEASAAVKIRTNVGSNKDLVQINEKIKNIIEQKNEAAASQNFVKAAQLQEAQNNLQMQREEMENALQVKASAE AVVGPEDIAEVVSDWTGVPVTQMKRDESRQLANLESILHKRVIGQDKAVSAVARAIHRSRSGIKDERRPIGSFLFLGPTG VGKTELAKSVAAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLDEVEKAHPDVFN LLLQVLDEGFLTDSKGRKVDFRNTIIIMTSNLGSRTLFDSKAVGFNADKVDQAKVRQVKVQQAIKQFFRPEFLNRIDETI IFDELTKKQLRDIVTLLTHKLVVRLQKKGITLRISRAALDKIVKDGYDPENGARPLRRAIQNDIEDKLAEMLITGEVKAN DTLKIGSQHGHLKFDVVPEKKLVKTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 4e-169 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lhv_0301 | YP_001576819.1 | ATP-dependent Clp protease | VFG0079 | Protein | 0.0 | 51 |
| lhv_0301 | YP_001576819.1 | ATP-dependent Clp protease | VFG0080 | Protein | 8e-140 | 48 |
