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Name : lhv_1897 (lhv_1897) Accession : YP_001578041.1 Strain : Lactobacillus helveticus DPC 4571 Genome accession: NC_010080 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 1866227 - 1867936 bp Length : 1710 bp Strand : + Note : - DNA sequence : ATGTATCAAAATTATACCACAGGCCAAACTGCTTTAACACTTAATCTGGACTTTACTATCCCTAACAATCATTTAGCCAA CACAATCAGCTGCTTCGTTGATTCTATTCCGGAAGATGTCTTGCTGGGTGATACCGCTAAAACTGGACGGCCTGCTTATC ATCCAGCTATGATGCTTAAGATTTTGCTTTTTGCATATTCCAGAAGAGTATTTTCAGGCAGAAAGATTGAATTAATGCTG GAAGAAAACCTGCCTATGATGGTATTGGCAGAGAAGCAAAAGATTTCATATCATACCATCAATAACTTTAGGTCTGGTGA TCACGCCAATGAACTGGTTAAGAAAAGCTTCCTTTACTTTACTAATCTGTTAGAACAAGAAGGCTTAATCAATGAAGGAG CCATCTTTATTGATGGTACCAAGATTGAAGCTGACGCTAATCGCTATACTTTTGTTTGGCGCAAGGCAGCTGAAAAGTTC CATGAAAAGCTCAAAGGCCAAGCAGATGAGCTTTATGATGAACTGATTGCCAAAGAAGTAGTCAAAGCAATGGCTCAAGA AAAGGTACAAACCAGTCAAGGCTTAGAAGAACTAGCGCAAGAAACAGAAGATGAGATTGAAAAGCTGACTAAAGAAATTG AGCAAGAGCCTAAGGCAATTCCTGGCGGCTCGCTTAGAAAAGCAAGAAGACGTGGTCTTAAAAAGCTGCTTCATAGGCTA AAAAAAGACTATGTTCCTCGCATGAAGAAATATGAAGAAGCAGAAGAAATCTTTGCTGGACGCAACAGCTATTCCAAGAC TGATCATGATGCGACTTTTATGCATATGAAGGAAGACCATATGAAGAATGGTCAGCTGAAGCCAGGCTGCAATATTCAAG CCGCTACAACGGATCAATATGTAGTCGGCTTTGCCTTGTACCCTAACCCAACTGACTTTAAGACATTAGAACCATTTTTA AAGCAGATGCCAATATTAGATAAGTTCGATAAGATTGTCGCCGATGCTGGTTATGGCAGCGAGTACAACTATTCTATGCT AGAGAAAGAATATCCAGACAAGAAGTACTATATTCCCTACACTATGTATGAGAAGGAAAAGACCAGAAAATATCGCAACG ATCCGACTAAGCTGGCTAACTGGTTCTATGATGAAAAAGATGATTACTATCTTGATCAAAATGGCGTCAGGTTCAACTTT AAGTATTATAGTCAGCGTAAAGACCGCTCGACTGGTCAGGTTCGTGATTTTAAGGTCTATGAAGCAGATGAATTCCAACT AACGCCAGAATTAGAATGCCTAGCCAAAACCAAAAGTGGTCGTCAACGCCAAGTACGCTATAATCCTAACTGGCAGTATT TAAAGGAAAAAGCCAAAGAAGTTCTTCAGAGTCCTGAAGGCAGGCACATCTACAGCATGAGAAAGTATGATGTGGAGCCA ATTTTTGGACATTTGAAGAACGTTTTTGGCATGCGTCGAACTCATTTAAGAGGCAAAAAGAAGGTTGAAACTGATGTTGG AATAGCCTTCATGATGATGAATTTAAGCAAATATTGGAACAGAAGATGGTCAAAAGACCAATTTTCTTTGTTCAAAAATA AAAATAGAGAGAAAAAACGACCAATCAAACTCAAATTAAGAGTTGAATTGATCGTTTTTCAGTATCTAAGGGTTGGTTAT TTCCCAGACACTTTTCTATTATTAAACTAA Protein sequence : MYQNYTTGQTALTLNLDFTIPNNHLANTISCFVDSIPEDVLLGDTAKTGRPAYHPAMMLKILLFAYSRRVFSGRKIELML EENLPMMVLAEKQKISYHTINNFRSGDHANELVKKSFLYFTNLLEQEGLINEGAIFIDGTKIEADANRYTFVWRKAAEKF HEKLKGQADELYDELIAKEVVKAMAQEKVQTSQGLEELAQETEDEIEKLTKEIEQEPKAIPGGSLRKARRRGLKKLLHRL KKDYVPRMKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGCNIQAATTDQYVVGFALYPNPTDFKTLEPFL KQMPILDKFDKIVADAGYGSEYNYSMLEKEYPDKKYYIPYTMYEKEKTRKYRNDPTKLANWFYDEKDDYYLDQNGVRFNF KYYSQRKDRSTGQVRDFKVYEADEFQLTPELECLAKTKSGRQRQVRYNPNWQYLKEKAKEVLQSPEGRHIYSMRKYDVEP IFGHLKNVFGMRRTHLRGKKKVETDVGIAFMMMNLSKYWNRRWSKDQFSLFKNKNREKKRPIKLKLRVELIVFQYLRVGY FPDTFLLLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 2e-77 | 41 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 2e-77 | 41 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 1e-77 | 41 |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 2e-77 | 41 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 5e-75 | 41 |
