Gene Information

Name : lhv_1878 (lhv_1878)
Accession : YP_001578028.1
Strain : Lactobacillus helveticus DPC 4571
Genome accession: NC_010080
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1845454 - 1846128 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAGTAATTGAGTTGAAAAATGTAGAAAAAATTTACGGTAAAGGCGATGCTCGAGTTGAAGCGTTAAAGGATATCAA
TTTTGAAGCCGATAAAAGCGAATTGGTTTTAATTATGGGACCGTCCGGTGCAGGTAAAAGTACTTTTTTAACGATTGCCG
GATCGCTGCAAAAACCAACTTCAGGCCAAGTTATCGTCAATGGGGAAGATATCAGCAAGTTTTCTGATAAAAAAAGAAAC
AACTTACGTTTAAATGAAATTGGTTTTATTTTACAAGCTTATAATTTAGTTCCATATCTGACTGTTCATGATCAATTTGT
TTTGGTTGATAAAGTTAAAAAAGAAGGTAATTTGTCCAAAGAAGATTTAGACAAATTGCTCAAAGATTTGGGGATTACTA
AATTAGTTAAAAAATATCCTAATGAATTGTCAGGCGGTCAGCAACAGCGTGTGGCAATTGCACGTGCACTTTATGCTAAT
CCTGCAATTTTGCTGGCTGATGAGCCTACGGCATCTCTTGATACGCAAAACGTAGAAGAGGTTGGCAAATTGTTTAAGAA
ACTTGCTAAAGAACGTGAAAAAGCAATTTTGATTGTCACCCACGATCCTCGTCTTGAAAAATATGCGGATCATATTTATG
AGATGATGGATGGAAAAATGAGTCAAAAGAAATAA

Protein sequence : 
MAVIELKNVEKIYGKGDARVEALKDINFEADKSELVLIMGPSGAGKSTFLTIAGSLQKPTSGQVIVNGEDISKFSDKKRN
NLRLNEIGFILQAYNLVPYLTVHDQFVLVDKVKKEGNLSKEDLDKLLKDLGITKLVKKYPNELSGGQQQRVAIARALYAN
PAILLADEPTASLDTQNVEEVGKLFKKLAKEREKAILIVTHDPRLEKYADHIYEMMDGKMSQKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-44 51
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 3e-40 49
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lhv_1878 YP_001578028.1 ABC transporter CP001581.1.gene798.p Protein 1e-32 43