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Name : USA300HOU_0041 (USA300HOU_0041) Accession : YP_001573965.1 Strain : Staphylococcus aureus TCH1516 Genome accession: NC_010079 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG5519 EC number : - Position : 49125 - 50912 bp Length : 1788 bp Strand : - Note : possible helicase DNA sequence : ATGAGTTACACATTGTTTGAAATTGGCCCATTTGCTTTAGATTCCTTCGGTTGGAAAGAAACGATACCACCTAAAAAAGA TGGTGACAGTGAAAAAGTGGTTAGAATGGCTAGCCCTATTATTGTTAATGCAAGATTTTCTGATCCAATTACTGGTGTTG AAAAGTTGATTATTACTAACAACAATGGTAAAAAAGACATTTTTGAGTCTGATATCTTAACAACACGAAACTTACCTTCT TTAATTAAATATGGCTACAGTATTAACGAGAAGTATATTAGATCATTGAGTTATGCCTTGCAATTGATGCGAGATAGATT ACCACTTTCTGAATTATATGAGGGTGTAGGTATACTAGAGACACCTTTTGGCTACTTGATATCGCTAGATAAAGTTCTCA AATCTATTCAATTTAATCAGTCCTCACCTTCATACCCTATTGTAGATAGTGCTTATGACTTAACTCCTAAAGGTACATTT GATAATTGGTTTAACATGTATATTGACGAGGTTAAAGGTCATCTTCTTTTAGAATTGGCAGTCATATTTGGGATTTCTGC CTTAGTGACAAGTTTTCTGAAGCATAAACATGAAATCGAATTTGCAGGAATTCTCTTTAGTTTTACAGGTCAATCCTCAA CCGGTAAGTCAACCGCAGCTGCTTTAGCTGTATCAGTCGCTGGTAACCCTACCAAAGGTAATGAAACTCTTTTTAGAAGT TGGAATGCCACACGAAACGCACTTGAAGGTTATTTGAGTAACAATTATGGCATTCCTATAGTATTTGATGAGCTTTCATC TACGACACTTAGAGATACCACGGGTTTGTTATATTCCATCGCTGAAGGTCAAGGTCGTCAACGTTCAAACGTTCATGGAG AAGTTAAAACGCCTAAGAATTGGGGTACTTCTGTCATTTCAACGTCAGAATACAGTATTTTTAATGATTCAGCTCAAAAC GATGGATTACGTGTAAGAACCATCGAGATTAATGAACAATTCACTACAAATGCGACCAATGCTGACAATATTAAAAAAGC TGTAGCACTAAACTATGGTCATGTTTTACCGTTAGTAGCTAAATATCTTATAAATCGTGAAGATGAAGTTATTCAATGGT TTTACAAGGAAGTAGATTGGTTTGAAGCTAAATTGAAAGATGAAACAAACAATACAGGTATTCGTATGTTTAAGCGTTAT GCAGTCATTACAACATCTGCGAAAATATTAGGTCGTGTTTTATCTACAGATATTGATATCGCTAATATAAGAGACTACTT TATTGATTATCATACTCATACAGTCTCTGAACGCTCATTAGCTGATAAAGCTATTGATGTCATCATTCAATTTGTGGCAC AAAACAGAGGTAAGTTTTCAGATGAAGGTGCTTTGAAAAATATGTTTGAGAACTATGGATTAATCTCATTAAAAGATGAC CATATCGAAGTAAAAATAATTGCGAACGTTTTTAAACAGATGCTAAACAATCATCAATTTCAAGATGTTAATAATGTTGT CAACGCCTTAAGAGATAAAGGTTTCATATTAGCTGACCGTGGACGCCAAACAACTAAAAGAAGTGTCAAAGATAATAGCG GTAAAAAACAATCACTTGTATTTTACCATCTAAAATTAGATGTAGAGTTTGCATCTATCCTCGGATTAACTAAAGATAAG TCGTTACTTCAAAATTGGACACCGTCAAATGATAACAAAGCTGCGAAAGAACTTTTTAAATCCGCTAATGAAGGGATAGG CCCTTCAGGAGTTCACGAAGATTTCTAA Protein sequence : MSYTLFEIGPFALDSFGWKETIPPKKDGDSEKVVRMASPIIVNARFSDPITGVEKLIITNNNGKKDIFESDILTTRNLPS LIKYGYSINEKYIRSLSYALQLMRDRLPLSELYEGVGILETPFGYLISLDKVLKSIQFNQSSPSYPIVDSAYDLTPKGTF DNWFNMYIDEVKGHLLLELAVIFGISALVTSFLKHKHEIEFAGILFSFTGQSSTGKSTAAALAVSVAGNPTKGNETLFRS WNATRNALEGYLSNNYGIPIVFDELSSTTLRDTTGLLYSIAEGQGRQRSNVHGEVKTPKNWGTSVISTSEYSIFNDSAQN DGLRVRTIEINEQFTTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDETNNTGIRMFKRY AVITTSAKILGRVLSTDIDIANIRDYFIDYHTHTVSERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKDD HIEVKIIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDK SLLQNWTPSNDNKAAKELFKSANEGIGPSGVHEDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAUSA300_0039 | YP_492759.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 0.0 | 100 |
| SAMSHR1132_00420 | YP_005324565.1 | hypothetical protein | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 100 |
| MW0040 | NP_644855.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 0.0 | 100 |
| unnamed | BAB72106.1 | hypothetical protein | Not tested | Type-IVa SCCmec | Protein | 0.0 | 99 |
| SAR0061 | YP_039532.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 87 |
| SERP2496 | YP_190038.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 87 |
| unnamed | BAC67559.1 | hypothetical protein | Not tested | Type-IVc SCCmec | Protein | 0.0 | 87 |
| SAV0063 | NP_370587.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 85 |
| SA0059 | NP_373299.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 0.0 | 85 |
| SE0038 | NP_763593.1 | hypothetical protein | Not tested | SCCpbp4 | Protein | 0.0 | 85 |
| unnamed | BAA94656.1 | - | Not tested | Type-II SCCmec | Protein | 0.0 | 85 |
| unnamed | BAB72125.1 | hypothetical protein | Not tested | Type-IVb SCCmec | Protein | 0.0 | 83 |
| SAS0034 | YP_042167.1 | hypothetical protein | Not tested | SCC476 | Protein | 0.0 | 78 |
| SACOL0043 | YP_184953.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 0.0 | 78 |
| unnamed | BAB83484.1 | - | Not tested | SCC 12263 | Protein | 0.0 | 78 |
| unnamed | BAA86647.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 0.0 | 78 |
| unnamed | BAB47592.1 | hypothetical protein | Not tested | Type-III SCCmec | Protein | 1e-168 | 67 |
| SSP0038 | YP_300128.1 | hypothetical protein | Not tested | SCC15305RM | Protein | 2e-170 | 61 |
| SARLGA251_00390 | YP_005754054.1 | hypothetical protein | Not tested | Type-XI SCCmec | Protein | 6e-167 | 58 |
