Gene Information

Name : set1 (USA300HOU_0423)
Accession : YP_001574329.1
Strain : Staphylococcus aureus TCH1516
Genome accession: NC_010079
Putative virulence/resistance : Virulence
Product : superantigen-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 447298 - 447993 bp
Length : 696 bp
Strand : +
Note : these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation

DNA sequence : 
ATGAAAATGAAAAATATTGCAAAAATAAGTTTGTTATTAGGAATATTAGCAACAGGTGTAAACACTACAACGGAAAAACC
AGTTCATGCCGAAAAGAAACCTATTGTAATAAGTGAAAATAGCAAAAAATTAAAAGCTTATTATAATCAACCTAGTATTG
AATATAAAAATGTGACAGGTTATATCAGTTTCATTCAACCAAGTATTAAATTTATGAATATCATAGATGGTAATTCTGTT
AATAATATTGCTTTAATTGGCAAAGATAAGCAACATTATCATACGGGTGTACATCGTAATCTTAATATATTTTACGTTAA
TGAGGATAAGAGATTTGAAGGTGCAAAGTACTCTATTGGGGGTATCACGAGTGCAAACGATAAAGCTGTCGACCTAATAG
CAGAAGCAAGAGTTATTAAAGAAGATCATACTGGTGAATATGATTATGACTTTTTCCCATTTAAAATAGATAAAGAAGCG
ATGTCATTGAAAGAGATTGATTTTAAATTAAGAAAATACCTTATTGATAATTATGGTCTTTACGGTGAAATGAGTACAGG
AAAAATTACAGTCAAAAAGAAATACTATGGAAAGTATACATTTGAATTGGATAAAAAGTTACAAGAAGACCGTATGTCCG
ATGTTATCAATGTCACAGATATTGATAGAATTGAAATCAAAGTTATAAAAGCATAA

Protein sequence : 
MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYNQPSIEYKNVTGYISFIQPSIKFMNIIDGNSV
NNIALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIGGITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEA
MSLKEIDFKLRKYLIDNYGLYGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVIKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
set7 YP_493110.1 superantigen-like protein Virulence vSa¥á Protein 1e-103 100
SACOL0469 YP_185359.1 superantigen-like protein Virulence vSa¥á Protein 1e-103 100
set2nm YP_001331423.1 superantigen-like protein Virulence vSa¥á Protein 1e-103 100
SAKOR_00405 YP_008490589.1 Exotoxin Virulence vSa¥á Protein 2e-103 99
set7 NP_370947.1 superantigen-like protein Virulence vSa¥á Protein 5e-101 98
SAS0385 YP_042510.1 superantigen-like protein Virulence vSa¥á Protein 1e-101 98
set17 NP_645200.1 superantigen-like protein Virulence vSa¥á Protein 1e-101 98
set7 NP_373633.1 superantigen-like protein Virulence vSa¥á Protein 1e-101 98
SAR0423 YP_039875.1 superantigen-like protein Virulence vSa¥á Protein 7e-89 79
SAMSHR1132_03730 YP_005324895.1 exotoxin Virulence vSa¥á Protein 1e-83 75
set9 NP_373635.1 superantigen-like protein Virulence vSa¥á Protein 2e-43 48
SAMSHR1132_03740 YP_005324896.1 exotoxin Virulence vSa¥á Protein 9e-38 43
SAMSHR1132_03810 YP_005324902.1 exotoxin Virulence vSa¥á Protein 2e-29 42
SAKOR_00417 YP_008490601.1 Exotoxin Not tested vSa¥á Protein 7e-26 41
SAS0396 YP_042522.1 superantigen-like protein Virulence vSa¥á Protein 3e-31 41
set26 NP_645211.1 superantigen-like protein Virulence vSa¥á Protein 3e-31 41
SAR0435 YP_039886.1 superantigen-like protein Virulence vSa¥á Protein 2e-29 41
SAUSA300_0407 YP_493121.1 superantigen-like protein Virulence vSa¥á Protein 5e-28 41
SACOL0478 YP_185368.1 superantigen-like protein Virulence vSa¥á Protein 5e-28 41
set11nm YP_001331434.1 superantigen-like protein Virulence vSa¥á Protein 5e-28 41