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Name : ccrA (USA300HOU_0040) Accession : YP_001573964.1 Strain : Staphylococcus aureus TCH1516 Genome accession: NC_010079 Putative virulence/resistance : Unknown Product : cassette chromosome recombinase A Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 47542 - 48891 bp Length : 1350 bp Strand : - Note : - DNA sequence : ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGTCGCAAAGATAATCGTAGTGGGT ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACGTACCATGTTCATATCTTAAGCGTACATGATGGTTACTTTGA TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCGGATAACATTGGAGAAC AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGTTACGAATATCAC AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA GAGAGCAAACACAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACATCATTCAA AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT TATAGGAATCTATTTCAAAAATGAACCACTCAATATTGTCAATCAAACCATGCAATCATCGATTGCATAA Protein sequence : MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQ NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccrA | YP_492758.1 | cassette chromosome recombinase A | Not tested | Type-IV SCCmec | Protein | 0.0 | 100 |
| ccrA2 | BAC67560.1 | cassette chromosome recombinase A2 | Not tested | Type-IVc SCCmec | Protein | 0.0 | 100 |
| SAMSHR1132_00410 | YP_005324564.1 | site-specific recombinase | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 100 |
| ccrA | BAB72108.1 | cassette chromosome recombinase A | Not tested | Type-IVa SCCmec | Protein | 0.0 | 99 |
| ccrA2 | DAA01834.1 | cassette chromosome recombinase A type 2 | Not tested | SCCpbp4 | Protein | 0.0 | 99 |
| SE0037 | NP_763592.1 | cassette chromosome recombinase A | Not tested | SCCpbp4 | Protein | 0.0 | 99 |
| ccrA | NP_644854.1 | cassette chromosome recombinase A | Not tested | Type-IV SCCmec | Protein | 0.0 | 98 |
| ccrA | NP_370586.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 98 |
| ccrA | NP_373298.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 98 |
| ccrA | BAA82194.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 98 |
| ccrA | YP_039531.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 0.0 | 97 |
| SERP2498 | YP_190040.1 | cassette chromosome recombinase A | Not tested | Type-II SCCmec | Protein | 0.0 | 97 |
| ccrA | BAB72127.1 | cassette chromosome recombinase A | Not tested | Type-IVb SCCmec | Protein | 0.0 | 97 |
| ccrA1 | YP_005754052.1 | site-specific recombinase CcrA1 | Not tested | Type-XI SCCmec | Protein | 6e-163 | 78 |
| ccrA1 | BAB83486.1 | site-specific recombinase | Not tested | SCC 12263 | Protein | 9e-163 | 77 |
| ccrA1 | BAA86648.1 | cassette chromosome recombinase A1 | Not tested | Type-I SCCmec | Protein | 3e-162 | 76 |
| ccrA1 | YP_042166.1 | site-specific recombinase | Not tested | SCC476 | Protein | 8e-161 | 76 |
| SSP0036 | YP_300126.1 | cassette chromosome recombinase A | Not tested | SCC15305RM | Protein | 9e-162 | 76 |
| ccrA1 | YP_184952.1 | cassette chromosome recombinase A1 | Not tested | Type-I SCCmec | Protein | 4e-162 | 76 |
| ccrA3 | BAB47596.1 | cassette chromosome recombinase A3 | Not tested | Type-III SCCmec | Protein | 1e-153 | 74 |
| ccrA3 | BAB46971.1 | cassette chromosome recombinase A3 | Not tested | Type-IIIinv SCCmec | Protein | 1e-153 | 74 |
| ccrA4 | DAA01836.1 | cassette chromosome recombinase A type 4 | Not tested | SCCpbp4 | Protein | 4e-107 | 50 |
| SE0057 | NP_763612.1 | cassette chromosome recombinase A | Not tested | SCCpbp4 | Protein | 6e-107 | 50 |
