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Name : USA300HOU_0034 (USA300HOU_0034) Accession : YP_001573958.1 Strain : Staphylococcus aureus TCH1516 Genome accession: NC_010079 Putative virulence/resistance : Unknown Product : IS1272 transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 42442 - 43965 bp Length : 1524 bp Strand : - Note : - DNA sequence : ATGATGTTAAAAGTGATTCTATATGCCTACACACAATCTGTATTCTCAGGTCGTAAAATAGAAAAAATGCTTAATGATAG CATCCGAATGATGTGGCTATCACAAAATCAAAAACCTTCTTATAAAACAATTAATCAATTTAGAGTAAATCCAAAAGTAG ATGCTTTATTAGAATCTTTATTTATTCAATTTTACAGTCAGTGTGTAAAACAAAATCTTATAGATGATAAAGCTATTTTT ATTGATGGTACAAAAATTGAAGCAAATGCCAATCGATATACATTTGTATGGAAAAAGAGTATTCAAAACCATGAATCAAA GATGAATGAGGATTCTAAAGCCCTCTACCATGAATTGGTAACCAATAAAATCATACCGGAAATTAAAGAAGATCATGATA ATGAATTAACAAAAGAAGAAATAGATTTGATTGGTAGTCACTTAGATAAAGAAATCGAAGATTTAAACCAACATATCAAC AATGAAAAATGTACTAAAACAAGAAAACAAATACGTCTCAAAAGAACTAAAATCAAAAAATACAAAAAGCAAATCAATGA TTATTTTGAGCGAAAGTATCGATACGAATTTCAAAAATCTATTTTAAAGGATAGAAATAGTTATTCTAAGACAGATTATG ATGCGACATTTATGAGAATGAAAGAAGATCACATGAAAAATGGACAACTTAAGCCAGGGTATAATTTACAAATAGCAACA AATTCCCAATTTGTTTTATCTTATAATGTGTATCAAAATCCAACGGATACTAGAACGATGATTCCATTTTTAAATTCAAT TCAAGAGACCTACGGTCATTTACCTGAATATATTGTAGCTGATGCAGGTTATGGTAGTGAATCAAATTATAAGGCAATTA TAGATGACTTTAATCGAACGCCACTCATAACATATGGAATGTTTATAAAAGATAAAACTAAAAAATATAAAAGTGACATC TTTAATACTCAAAATTGGAACTATGACGAAATTAATGACGAATTCATTTGTCCGAATAATAAACGGCTAGGTTTTAAAAG ATATGCCTATCGTCATGATAAGTATGGTTATAAGCGAGACTTCAAATTATATGAATGTGATGATTGTTCAGAATGTCCTC TGAAAAATCAATGTATGAACTTCAATTCAAAAACAAACAAAAAAATAATGAAGAATTATAACTGGGAATATTTTAAATCC CAAATTAACAAAAAGCTTTCAGAACCAGAAACAAAAAATATCTACAGTCAAAGAAAAATTGATGTGGAACCTGTTTTTGG ATTTATGAAGGCTATTTTGGGTTTCACTCGGATGTCTGTCCGAGGACTCAATAAAGTCAAAAGAGAACTTGGTTTTGTAT TAATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTATAAAAAAGACAATTTCTAT ATTATTTCAATAGAAATTGTCTTTTTTCACTTATCCAAGAACTTTATGTCCCGGACTCATTATGATTTATTTTTTTATTG CTGA Protein sequence : MMLKVILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINQFRVNPKVDALLESLFIQFYSQCVKQNLIDDKAIF IDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELVTNKIIPEIKEDHDNELTKEEIDLIGSHLDKEIEDLNQHIN NEKCTKTRKQIRLKRTKIKKYKKQINDYFERKYRYEFQKSILKDRNSYSKTDYDATFMRMKEDHMKNGQLKPGYNLQIAT NSQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRTPLITYGMFIKDKTKKYKSDI FNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRDFKLYECDDCSECPLKNQCMNFNSKTNKKIMKNYNWEYFKS QINKKLSEPETKNIYSQRKIDVEPVFGFMKAILGFTRMSVRGLNKVKRELGFVLMALNIRKVVAQRAENNQKIYKKDNFY IISIEIVFFHLSKNFMSRTHYDLFFYC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 0.0 | 100 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 0.0 | 100 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 0.0 | 100 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 0.0 | 100 |
| unnamed | BAC67565.1 | hypothetical protein | Not tested | Type-IVc SCCmec | Protein | 1e-173 | 100 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 0.0 | 99 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 3e-172 | 99 |
| SE0076 | NP_763631.1 | transposase | Not tested | SCCpbp4 | Protein | 0.0 | 90 |
