|
Name : xerD (SARI_04606) Accession : YP_001573520.1 Strain : Salmonella enterica RSK2980 Genome accession: NC_010067 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 4510058 - 4510954 bp Length : 897 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : GTGGAACAGGATTTAGCGCGTATTGAGCAGTTTCTGGATGCCCTGTGGCTGGAACGAAATCTGGCGGAAAATACATTAAG CGCGTATCGTCGCGATTTATCGATGGTCGTCGCGTGGTTGCGCCATCGTGGAAAAACGCTTGCGACGGCGCAGGCTGATG ATTTACAAACGCTGCTGGCTGAACGGGTCGAGGGCGGATACAAAGCGACCAGCTCCGCGCGCCTGTTAAGCGCTATGCGG CGTTTTTTCCAGCATCTGTATCGTGAAAAGTATCGTGAGGATGATCCGAGCGCGCAGTTGGCCTCGCCTAAGCTTCCGCA GCGTTTACCGAAAGATCTTAGCGAAGCGCAGGTTGAACGGCTTTTGCAGGCGCCGCTTATTGAGCAACCTTTGGAGTTGC GTGATAAAGCCATGCTGGAAGTGTTGTACGCCACCGGACTGCGCGTGTCGGAGCTGGTGGGGCTGACAATGAGCGATATC AGTCTGCGGCAGGGCGTTGTGCGGGTTATCGGTAAAGGCAATAAAGAGCGGCTGGTGCCGTTAGGCGAAGAGGCGGTGTA TTGGCTGGAGACGTATCTGGAGCATGGGCGTCCCTGGTTACTTAATGGCGTATCGATTGACGTATTGTTCCCCAGCCAGC GTGCGCAGCAGATGACACGGCAGACCTTCTGGCACCGTATTAAACATTATGCGGTGCTGGCTGGAATTGATAGCGAAAAA CTATCGCCCCACGTTTTACGTCACGCTTTCGCCACGCATTTGCTGAATCACGGCGCCGACTTACGTGTCGTACAGATGCT ACTCGGGCATAGCGATCTTTCGACGACACAAATTTATACCCATGTCGCAACGGAGCGTTTGCGTCAACTTCATCAACAGC ACCACCCGCGGGCATGA Protein sequence : MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSAMR RFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDI SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 9e-62 | 53 |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 9e-62 | 53 |
