Gene Information

Name : SARI_03887 (SARI_03887)
Accession : YP_001572823.1
Strain : Salmonella enterica RSK2980
Genome accession: NC_010067
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3814110 - 3815276 bp
Length : 1167 bp
Strand : -
Note : 'COG: COG0582 Integrase; Psort location: cytoplasmic, score: 23'

DNA sequence : 
ATGGCACTTACAGATATACAAATCAAACGAGCAAAGCCCCAAGACAAGCCATATACATTGAACGACGGGCAAGGCCTGTC
ATTGCTTATCAATCCCGATGGCTCGAAGGGCTGGCGTTTTCGTTTCCGCTTTGCCGGGAAAGCGCGGTTAATGTCATTTG
GCAGCTACGATTTGGTAAGCCTTGCAGAAGCGCGTGAGAAGCGTGACGCCGCCCGTAAGCAAGTTGCTAATGGCATTGAC
CCAGTAGAGGAACGAAAAGCATTAAAACTCGCTCAAAAGCTATCAACAGAAAACTCTTTCGAATCAGTAAGCCGTGAGTG
GCATTCAACTAAAGCTGATCGTTGGACGGTTGCTTATCGTGAGGAAATCATCAAAACATTTGAGCAGGATGTTTTCCCTT
TTATTGGTAAACGACCTATAGGTGAGATTAAGCCACTAGAGTTGCTTGAGGTGCTGCGACGTATTGAAAAACGTGGGGCT
TTAGAGAAAACCCGAAAGGTGCGACAGAGGTGTGGAGAGGTGTTTCGCTATGCCATCATAACAGGGCGTGCTGAGTACAA
TCCTGCACCTGATTTGGCTATCGCATTGGCCGTTCCCAAGCAAAAACACCATCCTTTTTTATCCGCAGAAGAGTTACCTC
ATTTTATTCGAGATCTGGAAGCATATACCGGCAGTATCATTACGAAGAATGCTACAAAGATAGTTATGTTAACTGGTGTC
CGAACCCAAGAGATGCGCTTTGCTACGTGGGATGAGGTAAATCTTGAGAAAGGTATATGGGAAATCCCCGCTGAACGGAT
GAAAATGCGTAGGCCTCACATTGTGCCCCTATCTACTCAGGTGATCGATCTTTTCAAGCAACTCAAACCAATAACCGGTC
ATTATCCCTACATTTTTATTGGTAGGAATAACCGTAGTAAACCAATCTCTAAAGAAAGCGTGTCACAGGTGATTGAGTTA
CTTGGTTACAAAGGACGCGCTACAGGTCACGGATTTAGACATACAATGTCGACAATCTTGCATGAACAAGGATTTGATAG
TGCATGGATTGAGATACAATTAGCACATACAGATAAAAATGCTATTCGAGGAACCTATAATCATGCTATATATTTGGAAA
ATAGGCGAATAATGCTACAGTGGTATTCTGATAACTTAATAACTTGA

Protein sequence : 
MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVSLAEAREKRDAARKQVANGID
PVEERKALKLAQKLSTENSFESVSREWHSTKADRWTVAYREEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGA
LEKTRKVRQRCGEVFRYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV
RTQEMRFATWDEVNLEKGIWEIPAERMKMRRPHIVPLSTQVIDLFKQLKPITGHYPYIFIGRNNRSKPISKESVSQVIEL
LGYKGRATGHGFRHTMSTILHEQGFDSAWIEIQLAHTDKNAIRGTYNHAIYLENRRIMLQWYSDNLIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 2e-136 71
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-137 71
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-134 70
int ACU09430.1 integrase Not tested LEE Protein 1e-134 70
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-134 70
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-134 70
int AAD44730.1 Int Not tested SHI-2 Protein 9e-135 70
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-134 70
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-134 70
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-134 70
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-106 58
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-107 54
intA AAB00935.1 integrase A Not tested vap locus Protein 1e-58 43
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 1e-58 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_03887 YP_001572823.1 hypothetical protein VFG0783 Protein 7e-135 70
SARI_03887 YP_001572823.1 hypothetical protein VFG0598 Protein 1e-134 70