Gene Information

Name : SARI_01563 (SARI_01563)
Accession : YP_001570599.1
Strain : Salmonella enterica RSK2980
Genome accession: NC_010067
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1517397 - 1518044 bp
Length : 648 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGTCTTTACCAGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTCCTTTCAATATTGCCTCTTATTATCGTAATGGG
AACCTCTTTTCTTAAACTGGCGGTAGTTTTTTCGATTTTACGAAATGCTCTTGGTATTCAACAAGTTCCCCCAAACATTG
CGCTTTATGGCCTTGCGCTTGTACTTTCCTTATTCATTATGGGACCAACGCTATTGGCTGTAAAAGAGCGCTGGCATCCA
GTTCAGGTCGCTGACGCTCCATTCTGGATGTCTGAATGGGACAGTAAAGCATTAGCTCCTTATCGACAATTTTTGCAAAA
AAACTCTGAAGAAAAGGAGGCCAGTTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGATATAAAAAGAAAAATAA
AGCCTGATTCTTTGTTGATATTAATTCCTGCATTTACTGTGAGTCAATTAACGCAGGCATTTCGGATCGGATTATTAATT
TATCTTCCTTTTCTGGCTATTGATCTGCTAATTTCAAATATACTGCTAGCTATGGGGATGATGATGGTATCGCCTATGAC
TATTTCATTACCGTTTAAATTGCTGATATTTTTACTGGCAGGCGGCTGGGATCTGACACTGGCACAATTAGTACAGAGCT
TTTCATGA

Protein sequence : 
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHP
VQVADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-84 99
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-84 99
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-85 99
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-85 99
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-85 99
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-57 61
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-48 55
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-44 54
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-44 54
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-45 53
escR AAC31528.1 L0049 Virulence LEE Protein 6e-45 53
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-45 53
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-45 53
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-45 53
escR AAC38369.1 EscR Virulence LEE Protein 4e-44 53
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-45 53
escR AAK26700.1 EscR Virulence LEE Protein 6e-45 53
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-45 53
escR AAL57527.1 EscR Virulence LEE Protein 6e-45 53
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-45 53
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-45 53
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-44 53
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-35 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-35 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-35 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-35 45
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 7e-30 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-35 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-28 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-28 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-35 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-35 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-35 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 9e-32 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 7e-36 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 7e-31 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 5e-31 41
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_01563 YP_001570599.1 type III secretion system protein VFG0519 Protein 2e-85 99
SARI_01563 YP_001570599.1 type III secretion system protein VFG0188 Protein 3e-51 56
SARI_01563 YP_001570599.1 type III secretion system protein VFG0394 Protein 5e-47 55
SARI_01563 YP_001570599.1 type III secretion system protein VFG0715 Protein 2e-44 53
SARI_01563 YP_001570599.1 type III secretion system protein VFG0827 Protein 3e-45 53
SARI_01563 YP_001570599.1 type III secretion system protein VFG0044 Protein 1e-39 46
SARI_01563 YP_001570599.1 type III secretion system protein VFG1259 Protein 3e-31 43