Gene Information

Name : SARI_00108 (SARI_00108)
Accession : YP_001569203.1
Strain : Salmonella enterica RSK2980
Genome accession: NC_010067
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 103823 - 104671 bp
Length : 849 bp
Strand : -
Note : 'COG: COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Psort location: plasma membrane, score: 23'

DNA sequence :
ATGTTCTTAACAACGTTACTGGAGCCGTTTCAGTTCGATTTTATGGTAAACGCCCTTATGGTTTCGGTCATTGTGTCGAT
TCCCTGCGCCTTGCTGTCAGTATTTTTAGTATTAAAAGGTTGGGCGTTAATGGGAGATGCAATGAGTCATGCCGTATTCC
CCGGGGTCGTGCTGGCATATATTGTGGGGATTCCCCTGGCAATTGGCGCTTTCATTGCCGGATTATTTTGCGCTATCGCG
ACCGGTTATCTGGACGAGAACAGCCGTATCAAACGTGATACGGTGATGGGCATCGTCTTTTCCGGGATGTTTGGCGCAGG
TCTGGTGCTCTATGTCTCTATTCAATCGGAAGTGCATCTGGATCACATCCTGTTCGGCGATATGCTGGGCGTATCGCTGG
GAGATATCATGCAAACGGCGATTATTGCGCTGGGTATTGCATTAATTATTGGGCTGAAATGGAAAGATCTCCTGCTATAT
GCTTTTGACCCGCACCAGGCGAAAGCATGCGGACTGAATACCACGCTACTGCATTACGGCTTATTGTGTATGATTGCGCT
AACTATCGTCGCCACGCTGAAATCGGTGGGGATTATTCTGTCGATCTCACTGCTTATCGCCCCCGGCGCGATTGCCATTT
TGCTGACGCGACGCTTTGCGCGCGCACTGGGTTTAGCGGTTAGTCTGTCAGTGATTACCGCTTTTGCCGGCGTCTATCTG
TCATTTTATTTTGATAGCGCGCCAGCGCCGACCATTGTGGTATTGTTTGCCATCGTATTTATTGCGGCATTTATTTACTC
AACATGGCGCGACAGGCGTAACGAAGTCGTACCAGAGGCGCACGGTTAA

Protein sequence :
MFLTTLLEPFQFDFMVNALMVSVIVSIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIA
TGYLDENSRIKRDTVMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIMQTAIIALGIALIIGLKWKDLLLY
AFDPHQAKACGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALGLAVSLSVITAFAGVYL
SFYFDSAPAPTIVVLFAIVFIAAFIYSTWRDRRNEVVPEAHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-109 97
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-108 97
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-108 96
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-108 96
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-108 96
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-36 42
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-36 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-36 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-36 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_00108 YP_001569203.1 hypothetical protein BAC0352 Protein 5e-109 97
SARI_00108 YP_001569203.1 hypothetical protein BAC0442 Protein 5e-59 53
SARI_00108 YP_001569203.1 hypothetical protein BAC0441 Protein 5e-36 43
SARI_00108 YP_001569203.1 hypothetical protein BAC0351 Protein 6e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SARI_00108 YP_001569203.1 hypothetical protein VFG0528 Protein 4e-109 97
SARI_00108 YP_001569203.1 hypothetical protein VFG0527 Protein 6e-37 42