Gene Information

Name : Daci_0876 (Daci_0876)
Accession : YP_001561907.1
Strain : Delftia acidovorans SPH-1
Genome accession: NC_010002
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 982794 - 983468 bp
Length : 675 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_3999 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCATTCTGATTGCCGAAGACGACCAGGTCCTGGCCGATGGTCTGCTGCGCAGCCTGCGCGGCTCGGGCGCCGTGGT
CAGTCATGTGGCCAACGGCAGCGAGGCCGATACCGCGCTGATGACCAGCAGCGAGTTCGACCTGCTCATCCTGGACCTGG
GCCTGCCCAAGATGCACGGGCTCGAAGTGCTCAAGAAGCTGCGCGGCCGGGGCGATGCGCTGCCGGTGCTCATCCTCACG
GCGGCCGACAGCGTGGAAGAGCGCGTGCAGGGGCTGGACTACGGCGCCGACGACTACATGGCCAAGCCGTTTGCGCTGTC
CGAGCTGGAGGCGCGTGTGCGCGCGCTCACGCGGCGCGGCATGGGTGGCGCCAGCAGCACCATCAAGCACGGCCCCCTGG
TCTACGACCAGGCCGGCCGCGTGGCCACCATCGACGGCAAGATGGTCGAGCTGTCGGCGCGCGAGCTGGGCCTGCTGGAA
GTGCTGCTGCAGCGTGCGGGCCGGCTGGTCAGCAAGGACCAGTTGGTCGAGCGCCTGTGCGAATGGGGCGACGAGGTCAG
CAACAATGCCATCGAGGTCTATATCCACCGCCTGCGCAAGAAGATAGAGCGCGGCCCCATCCGCATCGCCACCGTGCGCG
GCCTGGGCTACTGCCTTGAGAAGATCGCTTCCTGA

Protein sequence : 
MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHGLEVLKKLRGRGDALPVLILT
AADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRGMGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLE
VLLQRAGRLVSKDQLVERLCEWGDEVSNNAIEVYIHRLRKKIERGPIRIATVRGLGYCLEKIAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-37 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_0876 YP_001561907.1 two component transcriptional regulator BAC0487 Protein 6e-36 46
Daci_0876 YP_001561907.1 two component transcriptional regulator BAC0638 Protein 4e-27 44
Daci_0876 YP_001561907.1 two component transcriptional regulator BAC0083 Protein 1e-33 43
Daci_0876 YP_001561907.1 two component transcriptional regulator NC_002516.2.879194.p Protein 3e-33 43
Daci_0876 YP_001561907.1 two component transcriptional regulator BAC0347 Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_0876 YP_001561907.1 two component transcriptional regulator VFG0473 Protein 2e-37 43
Daci_0876 YP_001561907.1 two component transcriptional regulator VFG1390 Protein 1e-32 42
Daci_0876 YP_001561907.1 two component transcriptional regulator VFG1389 Protein 4e-28 41