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Name : Daci_5488 (Daci_5488) Accession : YP_001566502.1 Strain : Delftia acidovorans SPH-1 Genome accession: NC_010002 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 6092178 - 6093920 bp Length : 1743 bp Strand : + Note : KEGG: aav:Aave_3680 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase DNA sequence : ATGGCTGTTGCTGACTCCTCGCTCAAGAATGCTTCCGCTGTTGCATCGCTTCCCGGCATCGGGCGAGCCCTGATATCAGC AGGCAAGGTATCGCAGCAGGCAGCGGAAGCCGCCGCCAGCAAGGCCGGCGCCAACCGCACCTCGTTCATTGCCGAGTTGA GCAACGCGGGCATCCTCTCAGCCCTGGAAGTGGCCGAGACGGTCTCGACCATGTTCAGCGCGCCGCTGCTCGATCTTGAT GCCATCAACGCCGCGCGCCTGCCGCATGAGTTGCTGGACGCCAAGATCATCAGCTCCTATCGCGTCCTCCCGTTGAGCAA GCGCGGCAACCGCATCACGGTGGCCACAGCCGACCCGACACAACAGGAAGCTGCGGAGCAGATCAAGTTCACCACCCAGC TAGGCGTGGATTGGATCATCGTCGAAGCCGACAAGCTGGAGCGCCTGATAGCTCAGCAGAGCAAAAGCGCCAGCGAAGCC ATGGAGAGCTACAGCGGGGGCGGCGATTTCGAGTTCGGCGACCTCAAGCCCGACGAGGTTGCCGAGGAGAAAGACAACAC GGCGGCAGCGGACGTCGAGGACGCGCCCATCGTCAAGTTCCTGCACAAAATGCTGCTCGACGCCTTCAACATGCGCGCGT CGGACCTGCATTTCGAGCCCTACGAACATCAATATCGCGTACGCTTCCGCATTGACGGCGAGTTGCGCGAAATCGCATCA CCGCCCATTGCCATAAAGGAGAAGTTGGCCTCGCGCATCAAGGTGATCTCGCGCCTGGACATCTCGGAAAAACGTGTTCC TCAAGATGGCCGCATGAAGCTCAAGGTCGGCCCGGACCGCGTCATCGATTTTCGCGTGAGCACCCTGCCCACGCTCTTTG GCGAGAAGATCGTGATCCGTATCCTTGACCCAAGCTCGGCCAAGATGGGCATTGATGCCCTGGGCTACGAACCCGAGGAA AAGGCACGTCTGATCGAAGCCATCGGGCGCCCCTACGGAATGATTCTGGTGACAGGCCCCACGGGCTCGGGCAAGACGGT GTCGCTGTACACCTGCCTGAACATGCTGAACAAGGCCGGGGTGAACATCGCAACGGCAGAAGACCCTTCGGAAATCAACC TGCCCGGCGTCAATCAGGTCAATGTGAACGAAAAGGCGGGCCTTACCTTTGCGACGGCGCTCAAGGCCTTTCTGCGCCAG GATCCCGACATCATCATGGTCGGAGAAATCCGTGACCTAGAAACCGCCGACATCTCGATCAAGGCCGCACAGACCGGCCA CTTGGTGCTGTCCACGCTGCACACCAACGACGCACCGACCACGTTGACGCGCATGCGCAACATGGGCATTGCCCCCTTCA ACATCGCATCGAGCGTGATCTTGATCACCGCCCAGCGGCTGGCCAGGCGCCTGTGCCCCCAGTGCAAGGAGCCTGCGGAT ATCCCGCGGGAGGCGCTGCTGGAGGCGGGCTATGACGAGGCGGACATCGATGGCAGCTGGGTCACCTACAAGCCCGTGGG CTGCCAAGCATGCAACAACGGCTACAAGGGACGCGTCGGCATCTACCAGGTGATGCCGATCAGCGAGGAAATCCAGCGCA TCATCCTGCAGGACGGCAGCGCACTGGAGATCGCGGCACAGGCCAAGCGTGAAGGCGTACGGTCTCTGCGCGGATCCGGA CTGCACAAGGCCAGACTAGGACTGACCTCGCTCGAAGAAGTGCTGGCAGTCACCAATGAGTAA Protein sequence : MAVADSSLKNASAVASLPGIGRALISAGKVSQQAAEAAASKAGANRTSFIAELSNAGILSALEVAETVSTMFSAPLLDLD AINAARLPHELLDAKIISSYRVLPLSKRGNRITVATADPTQQEAAEQIKFTTQLGVDWIIVEADKLERLIAQQSKSASEA MESYSGGGDFEFGDLKPDEVAEEKDNTAAADVEDAPIVKFLHKMLLDAFNMRASDLHFEPYEHQYRVRFRIDGELREIAS PPIAIKEKLASRIKVISRLDISEKRVPQDGRMKLKVGPDRVIDFRVSTLPTLFGEKIVIRILDPSSAKMGIDALGYEPEE KARLIEAIGRPYGMILVTGPTGSGKTVSLYTCLNMLNKAGVNIATAEDPSEINLPGVNQVNVNEKAGLTFATALKAFLRQ DPDIIMVGEIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCPQCKEPAD IPREALLEAGYDEADIDGSWVTYKPVGCQACNNGYKGRVGIYQVMPISEEIQRIILQDGSALEIAAQAKREGVRSLRGSG LHKARLGLTSLEEVLAVTNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-80 | 43 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-80 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Daci_5488 | YP_001566502.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 5e-133 | 53 |
| Daci_5488 | YP_001566502.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 1e-143 | 52 |
| Daci_5488 | YP_001566502.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 1e-135 | 50 |
| Daci_5488 | YP_001566502.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 2e-82 | 46 |
| Daci_5488 | YP_001566502.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 2e-80 | 43 |
