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Name : lysS (Daci_5248) Accession : YP_001566262.1 Strain : Delftia acidovorans SPH-1 Genome accession: NC_010002 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 5815724 - 5817283 bp Length : 1560 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACCGAACACAACACCCCATCCGCAGCGGACCAGACCGCTCCCCAGGACGAAAACCAACTCATCGCCGAGCGCCGCGA AAAACTCAAGGCCCTGCGCGAACAGGTCCGTGAACAGGGCGGCGTGGCCTTCCCCAACGACTTCAAGCCCGCCGACCGCG CCGAGGCGCTGCAGCAGGCCCATGCCGACAAGAGCGCCGAGCAGTTGGACGCCGAAGCCGTGCAGGTCAGCCTGGGCGGC CGCATGATGCTCAAGCGCGTCATGGGCAAGGCCAGCTTTGCCACCATCCAGGACGGATCGCTGGGCCCCACGCACGGCCG CATCCAGCTGTACATCACGCGCGACACCGTGGGCGAGGAGGTCTATGCGGCCTTCAAGCGCTGGGACCTGGGCGACATCC TGGGCGCCGAGGGCACGCTGATGAAGACCAAGACCGGCGAGCTGTCGGTCAAGGTGCAGACGCTGCGCCTGCTCACCAAG AGCCTGCGTCCCATGCCCGACAAGTTCCACGGCATGGCCGACCTGGAGCAGAAGGTGCGCCAGCGCTATGTGGACCTGAT GATGGACGAGCAGGCCCGCCGCCGCTTCATCGCACGCAGCAAGGCCGTCTCGGGCATCCGCGAATTCATGGTGGAGCACG GCTTCCTGGAAGTGGAAACGCCCATGCTGCACCCCATTCCCGGCGGCGCCAACGCCAAGCCCTTCGTCACCCACCACAAC GCGCTGGACCAGGAGATGTACCTGCGCATCGCGCCCGAGCTGTACCTCAAGCGCCTGGTGGTCGGCGGCTTCGAGCGCGT GTTCGAGATCAACCGCAACTTCCGCAACGAAGGCATCTCGGTTCGCCACAACCCCGAGTTCACCATGATGGAGTTCTACG CGGCCTACTGGAACTACCGCGACCTGATGGACTACACCGAGGCCCTGGTGCGCGACGCCGCGCAAAAGGCCGTGGGCACG CTGCAGCTGACCTACGGCGGCAAGCCCGTGGACCTGTCCCAGCCCTTCCAGCGCCTGACCATTCCCGAGGCCATCGTCAA GTTCACCGAGGCGGGCGACAAGGTGGCCGACCGCGAATGGCTGACCAATGCGCTGCGCAAGCTGGGCATGACGGAAGAAA AGGACCGCCTGTCCACCCGCACGCTGGCCAGCCTGCAGGTGCTGTACTTCGAGGAAGTGGTGGAAGAAAAGCTCTGGCAG CCCACCTTCATCATGGAGCACCCCACCGAGATCTCGCCGCTGGCGCGCGCCAATGACGAGCGCCCCGAGGTCACCGAGCG CTTCGAGCTGTACATCACGGGCCGCGAATTCGGCAACGGTTTCTCCGAGCTCAACGACGCCGAGGACCAGGCCGCGCGCT TCAATGCCCAGGTCCAGGCCAAGGACGGTGGCGACGACGAAGCCATGTACTTCGACCACGACTTCGTTCGTGCCCTCGAG TACGGCATGCCCCCCACAGGCGGCTGCGGCATCGGCATCGACCGCCTGATGATGCTGCTGACCGACAGCGCCAGCATCCG CGACGTGATCCTGTTCCCTGCCCTGCGCCGCGAACAGTAA Protein sequence : MTEHNTPSAADQTAPQDENQLIAERREKLKALREQVREQGGVAFPNDFKPADRAEALQQAHADKSAEQLDAEAVQVSLGG RMMLKRVMGKASFATIQDGSLGPTHGRIQLYITRDTVGEEVYAAFKRWDLGDILGAEGTLMKTKTGELSVKVQTLRLLTK SLRPMPDKFHGMADLEQKVRQRYVDLMMDEQARRRFIARSKAVSGIREFMVEHGFLEVETPMLHPIPGGANAKPFVTHHN ALDQEMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMEFYAAYWNYRDLMDYTEALVRDAAQKAVGT LQLTYGGKPVDLSQPFQRLTIPEAIVKFTEAGDKVADREWLTNALRKLGMTEEKDRLSTRTLASLQVLYFEEVVEEKLWQ PTFIMEHPTEISPLARANDERPEVTERFELYITGREFGNGFSELNDAEDQAARFNAQVQAKDGGDDEAMYFDHDFVRALE YGMPPTGGCGIGIDRLMMLLTDSASIRDVILFPALRREQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-132 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001566262.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-132 | 54 |
