Gene Information

Name : Daci_5038 (Daci_5038)
Accession : YP_001566052.1
Strain : Delftia acidovorans SPH-1
Genome accession: NC_010002
Putative virulence/resistance : Resistance
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 5577544 - 5577879 bp
Length : 336 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: aav:Aave_4701 small multidrug resistance protein

DNA sequence :
ATGGCGTCCAACTACCTGTACCTGGGCCTGGCCATCGTCGCCGAGGTGGCGGCCACCTCCTGCCTCAAGCAGTCCGAAGG
CTTCACGCGGCTGTGGCCCAGCGTGGTCACGGTCCTGGGCTACGCGCTGGCCTTCTACTTCCTGTCGCTGACGCTGCGCA
CCGTGCCCACGGGCGTGGCCTATGCGATCTGGTCCGGCGCGGGCATCGTGCTGATCTCGCTGGTGGGCTGGCTCTGGCAG
GGCCAGACGCTGGACCTGCCCGCGCTGGCGGGCATGGGCCTGATCGTGGCGGGCGTGCTGGTCATCCAGCTGTTTTCCAA
GACCGCCGGACACTGA

Protein sequence :
MASNYLYLGLAIVAEVAATSCLKQSEGFTRLWPSVVTVLGYALAFYFLSLTLRTVPTGVAYAIWSGAGIVLISLVGWLWQ
GQTLDLPALAGMGLIVAGVLVIQLFSKTAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
qacEdelta1 CAJ77052.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 6e-21 56
qacEdelta1 ACN81026.1 QacEdelta1 Not tested AbaR5 Protein 8e-21 56
qacEdelta1 AGK07109.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacEdelta1 AGF35028.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacEdelta1 CAJ77088.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 6e-21 56
qacEdelta1 AFV53123.1 QacEdelta1 multidrug exporter Not tested AbGRI2-1 Protein 6e-21 56
qacEdelta1 AGF35063.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacE-deltal ACF06159.1 quartenary ammonium compound resistance protein Not tested Tn5036-like Protein 6e-21 56
qacEdelta1 AAK02047.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 6e-21 56
qacEdelta1 AGK36647.1 QacEdelta1 Not tested AbaR26 Protein 6e-21 56
qacEdelta1 AGK06933.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacE-delta1 ACY75523.1 QacE-delta1 Not tested Tn6060 Protein 6e-21 56
qacEdelta1 AAK02056.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 6e-21 56
qacEdelta1 AGK06970.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacE-delta1 ACY75532.1 QacE-delta1 Not tested Tn6060 Protein 6e-21 56
qacEdelta1 ABB48428.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
ACICU_00227 YP_001844886.1 membrane transporter Not tested AbaR20 Protein 8e-21 56
qacEdelta1 AGK06979.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacEdelta1 ABZ01839.1 QacEdelta1 Not tested SGI2 Protein 6e-21 56
qacEdelta1 YP_005797134.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 8e-21 56
qacEdelta1 AGK07016.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacE-delta1 AET25389.1 QacE-delta1 Not tested PAGI-2(C) Protein 6e-21 56
qacEdelta1 CAJ77030.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 6e-21 56
qacEdelta1 YP_005797150.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 8e-21 56
qacEdelta1 AGK07074.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacE-delta1 AFG30112.1 QacE-delta1 Not tested PAGI-2 Protein 6e-21 56
qacEdelta1 CAJ77049.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 6e-21 56
ebr YP_006098377.1 putative ethidium bromide resistance protein Not tested Tn2411 Protein 8e-21 56
qacEdelta1 AGK07100.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
qacEdelta1 AGF34989.1 QacEdelta1 Not tested SGI1 Protein 6e-21 56
unnamed CAD42068.1 hypothetical protein Not tested PAI II 536 Protein 1e-11 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_5038 YP_001566052.1 small multidrug resistance protein NC_002695.1.913273.p Protein 7e-23 61
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0150 Protein 8e-23 60
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0002 Protein 1e-25 60
Daci_5038 YP_001566052.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 1e-25 60
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0377 Protein 9e-23 59
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0322 Protein 2e-25 59
Daci_5038 YP_001566052.1 small multidrug resistance protein CP001138.1.gene1489. Protein 4e-25 59
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0324 Protein 5e-25 58
Daci_5038 YP_001566052.1 small multidrug resistance protein CP004022.1.gene1549. Protein 7e-21 56
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0323 Protein 3e-21 56
Daci_5038 YP_001566052.1 small multidrug resistance protein AE000516.2.gene3301. Protein 2e-11 51
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0249 Protein 2e-11 51
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0140 Protein 6e-16 47
Daci_5038 YP_001566052.1 small multidrug resistance protein BAC0192 Protein 1e-14 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_5038 YP_001566052.1 small multidrug resistance protein VFG1587 Protein 6e-12 42