|
Name : Daci_4150 (Daci_4150) Accession : YP_001565166.1 Strain : Delftia acidovorans SPH-1 Genome accession: NC_010002 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 4542282 - 4544294 bp Length : 2013 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGGCTGTTCTTGTGCGAGAAGCCCTCCCAGGGCAAGGATATTGGCCGGATTCTCGGCGCGACGCAGCGCGGTGAAGG CTGCCTCAGCGGCTCCGGCGTCACGATTACCTGGTGCATCGGCCATCTCGTAGAAGCGGCAGCACCCGAAGTCTATGACG CGGCGCTCAAGCGCTGGTCACTGGAGCAGTTGCCCATCATTCCCCAGCAGTGGCGGGTCGAGGTCAAACCCAAGACCGCC ACGCAATTCAAGGTCGTCAAGGCGCTTCTGGCGAAGGCGACCCATCTCGTCATCGCCACCGATGCCGACCGCGAGGGCGA GCTGATCGCCCGCGAGATCATCGACCTGTGCGGCTACCGTGGTCCCATCGAGCGCTTGTGGCTGTCGGCGCTCAACGATG CGTCGATCCGCACCGCGCTCGGCAAGCTGCGACCGTCGTCCGATACGCTGCCGATGTATTACTCGGCGCTGGCGCGTTCG CGGGCAGACTGGCTCGTGGGCATGAACCTCAGCCGTCTTTTCACGCTGCTCGGGCGGCAGGCGGGCTACGACGGCGTGCT GTCGGTCGGACGTGTCCAGACCCCGACCCTGAAGCTGGTCGTTGATCGCGACCGCGAAATCGCGGCTTTCAAGTCGGCGC CGTTCTGGGCCATCGACGTGTCTCTGTCCACAGAGGGTCAGGCTTTCTCCGCGCAGTGGGTTGCGCCCGACGGCTGCACC GACGACGCCGGTCGTTGCCTGCAACAGCCGGTCGCCCAGCAGGCGGCGCTGCAGATTCGCGTCGCGGACAACACCCAGGT GGTGTCGGTCGAGACCGAGCGCGTGCGCGAAGGCCCGCCACTGTTGTTCGACCTGAGCACCTTGCAGGAGGTCTGTTCCA AGCAGCTCGGGCTGGACGTGCAGGAGACATTGCAGATCGCCCAGGCCCTGTACGAGACGCACAAGGCCACGACCTACCCG CGCTCGGACTCCGGCTATCTGCCCGAAAGCATGTTCGCCGAGGTGCCCGCCGTCCTGGACAGCCTGCTCAAGACCGATCC GTCGCTGCGCCCGATCATGAGCCAGCTCGACCGCTCCCAGCGTTCGCGTGCATGGAACGACGGCAAGGTCACGGCGCACC ACGGCATCATTCCGACGCTCGAACCCGCGAACCTCTCTCCTCTGAGCGAGAAGGAACTGGCGGTGTACCGGCTGATCCGG GCGCATTACCTGGCGCAGTTCCTCCCGCACCACGAGTTCGACCGTACCGTGGCTGAGTTTTCCTGCGGCCAGCAGATGCT GGTGGCCACCGGTAAACAGGTGGTCGTCAAAGGCTGGCGTCTGGTGCTGGCCGAACCGCAAGCGGATGAGGACGGCGACG ACGCGGCGCGCAGCCAGGTGCTGCCCCCGCTGCGTGGGGGCCTGGCGTGCCAGGTGGCTGAGGTCGAGATCAAGGCGCTC AAGACGATGCCGCCCAAGCCCTACACCCAGGGCGAACTGGTCAAGTCGATGAAGGGCATTGCGCGCTTCGTGACCGACCC GCGCCTGAAGCAGAAGCTCAAAGACACGACGGGCATCGGCACCGAGGCGACGCGGGCCAACATCATCAGCGTGCTGATCG CCCGTGGCTACATCGTGAAGAAGGGGCGCTCCATTCGCGCATCGGATGCGGCGTTCACGCTGATCGACGCCGTGCCCGCA GCGATTGCAGACCCCGGCACGACGGCAGTGTGGGAGCAGGCGCTCGACATGATCGAGGCGGGACAGCTCACCCTGGACGT ATTCCTCAGCAAGCAGGCCGCCTGGATTTCGCAGTTGATCGCGCAGTACGGCAGCATGTCCCTGTCCATCAAGCTTCCCC ATGGGCCAGCATGTCCGCAGTGCGGCGCAGCGACGCGCCAGCGCACCGGCAAGAGCGGCCCATTCTGGTCGTGCAGTCGC TACCCCGACTGCAAAGGCACGCTGCCGGTCGAATCCGGTACGCCCAAGCGTGGCGCTTCGCGCTCGCGTAGCAGCGGCCG CAAAGGCGCCTGA Protein sequence : MRLFLCEKPSQGKDIGRILGATQRGEGCLSGSGVTITWCIGHLVEAAAPEVYDAALKRWSLEQLPIIPQQWRVEVKPKTA TQFKVVKALLAKATHLVIATDADREGELIAREIIDLCGYRGPIERLWLSALNDASIRTALGKLRPSSDTLPMYYSALARS RADWLVGMNLSRLFTLLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIAAFKSAPFWAIDVSLSTEGQAFSAQWVAPDGCT DDAGRCLQQPVAQQAALQIRVADNTQVVSVETERVREGPPLLFDLSTLQEVCSKQLGLDVQETLQIAQALYETHKATTYP RSDSGYLPESMFAEVPAVLDSLLKTDPSLRPIMSQLDRSQRSRAWNDGKVTAHHGIIPTLEPANLSPLSEKELAVYRLIR AHYLAQFLPHHEFDRTVAEFSCGQQMLVATGKQVVVKGWRLVLAEPQADEDGDDAARSQVLPPLRGGLACQVAEVEIKAL KTMPPKPYTQGELVKSMKGIARFVTDPRLKQKLKDTTGIGTEATRANIISVLIARGYIVKKGRSIRASDAAFTLIDAVPA AIADPGTTAVWEQALDMIEAGQLTLDVFLSKQAAWISQLIAQYGSMSLSIKLPHGPACPQCGAATRQRTGKSGPFWSCSR YPDCKGTLPVESGTPKRGASRSRSSGRKGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 87 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 76 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 4e-169 | 51 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-169 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-169 | 51 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-167 | 51 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 2e-168 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 5e-122 | 41 |
