Gene Information

Name : Daci_3859 (Daci_3859)
Accession : YP_001564875.1
Strain : Delftia acidovorans SPH-1
Genome accession: NC_010002
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3519
EC number : -
Position : 4251501 - 4253375 bp
Length : 1875 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: aav:Aave_1480 protein of unknown function DUF879

DNA sequence :
ATGAATCCCCGCCTCGTCGAGTACTACAACCGCGAACTGGCCTATCTGCGCGAGCTGGGCGCCGAGTTCGCCGCCGCCTT
CCCCAAGGTGGCGGGCCGCCTTTCCCTGCACGACACCGATGTGGCCGACCCCTATGTGGAGCGCCTGCTGGAAGGCTTCA
GCTTTCTGAGCGCGCGCATCCAGCTGAAGATGGATGCGGAGTTTCCGCGCCTGTCCCAGCGCATGATGGAGATGGTCTGC
CCCCACTACCTGGCGCCCACGCCATCCATGGTGGTGGTCCAGCTCAAGCCCAGCGCCAAGGAAGGCAACCTCGTGGACGG
CTTCACCCTGCCCTCTGGCAGCGTGCTGCGCACCCACAAGTCACAGGAAGAGCAGACCATCTGCGAATTCCGCACCGGCG
GGCCGCTGACGCTGTGGCCGCTGGAGATACGCCAGGCGCGCCTGGGCGGCCCGGCGCTGGACCTGCCCCATGCCCTGGTA
CCCCAGCTGGGCGAGGCCGGCGGCCACCTGCGCCTGCAGCTGGCCACGCTGGACGCCTCGCAGTGCATGCAGCTGGCGAT
GGACCAGCTGTGGGTCTACATCCATGCGGGCGATGTCGTCGCCTCCCACCTGCAGGAACTCATCCACACGCAGACGCTGG
CCATCGTTGTCCACCACCCGCAGGACCCGCGCCAGGTCTGGGACGTGCTGCAGCCCGATGCACTGCGCGCCGAAGGCCAT
GACAGCGAGCAGGCGCTGATTCCCTATTCGCACCGCGCCTTCCAGGGCCACCGTCTGCTGCACGAGTACTTTGCGTTTCC
CGCACGGCAGCGGTTCTTCTCGATCAACGGCCTGTCGCGCAGCATGCGCCGCATTGCCCATGACGGCGTGGGCATCACCG
TGCTGCTGCGCCGCGCCGCGCCCACGCTGGAGCCGCAGATCGACGCGGCCAAGCTGCTGATGCACTGCATTCCGGCCATC
AACCTGTTCGAGTACACGGCGGACCGCCTGCATGTGGCCTCCAACGTGCACGAGTACCACGTCATTCCCGACCGCACGCG
GCCGCTGGACTTCGAGGTCTACGGCGTGCAGGCCGTCACCGGCCACCACGAAGGCAAGACCCAGGACCGCGAATTCGCGC
CGCTGTACGCATCCACGCACGGCCTGCACTCCACCGAGCAGGCCTACTTCACCACGCGGCGCGAGCCCCGGCTGTTTTCC
GAGCGCAGCCTGCGCAGCGGCCCGCGCACGCAGTACCTGGGCTCGGAAGTCTTCATCTCCCTGGTGGACCAGCGCGAGGC
CCCGTTCTCCGACGACCTCAAGCAGCTGTCCATGCACACCCTGTGCACCAACCGCGACCTGCCCCTGCTCATGCGCGTCA
ACCAGCCGGGCGGCGACTTTGCGCTGCAGGAATCGGCGCCCGTGGAATGGGCCCGCGCCATCGCCGGCCCCAGCGCGCCC
ATCCCCGCCGTGGCCGACGGAGGCCTGACCTGGCGATTGATCTCCCACCTGAGCCTGAACTACCTGGCCATGACCGATCT
GTCCGACGAGGAAGGCGCGGCCACGCTGCAGGAGCTGCTGCGCCTGTACCTGGACCTGGGCAACCACCAGCTGGCCGGGC
AGATCGCCGCCATCCAGGGCATGCGCATCGAACCCATCACGCGCCGCCTGCCCCAGCACCGCCAGCTGGTCTACGGCCGC
GGCGTGGGCGTACACCTGAGCGTGGACGAGCCGGCCATGGCTGGCGTCAGCCCCTGGCCCCTGTCCAATGTGCTGGAGCG
ATTCTTCGCCCGCCATGTGGGCGTCAACAGCTTCACCGAGCTGCAGCTGCACTCGCGCCAGCGCGGTCCCGTCGCGCGCT
GGACTCCGCGCCCCGGACAAAGGCCCGGCATATGA

Protein sequence :
MNPRLVEYYNRELAYLRELGAEFAAAFPKVAGRLSLHDTDVADPYVERLLEGFSFLSARIQLKMDAEFPRLSQRMMEMVC
PHYLAPTPSMVVVQLKPSAKEGNLVDGFTLPSGSVLRTHKSQEEQTICEFRTGGPLTLWPLEIRQARLGGPALDLPHALV
PQLGEAGGHLRLQLATLDASQCMQLAMDQLWVYIHAGDVVASHLQELIHTQTLAIVVHHPQDPRQVWDVLQPDALRAEGH
DSEQALIPYSHRAFQGHRLLHEYFAFPARQRFFSINGLSRSMRRIAHDGVGITVLLRRAAPTLEPQIDAAKLLMHCIPAI
NLFEYTADRLHVASNVHEYHVIPDRTRPLDFEVYGVQAVTGHHEGKTQDREFAPLYASTHGLHSTEQAYFTTRREPRLFS
ERSLRSGPRTQYLGSEVFISLVDQREAPFSDDLKQLSMHTLCTNRDLPLLMRVNQPGGDFALQESAPVEWARAIAGPSAP
IPAVADGGLTWRLISHLSLNYLAMTDLSDEEGAATLQELLRLYLDLGNHQLAGQIAAIQGMRIEPITRRLPQHRQLVYGR
GVGVHLSVDEPAMAGVSPWPLSNVLERFFARHVGVNSFTELQLHSRQRGPVARWTPRPGQRPGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 1e-126 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_3859 YP_001564875.1 type VI secretion protein VFG2074 Protein 5e-140 48