|
Name : Daci_3374 (Daci_3374) Accession : YP_001564397.1 Strain : Delftia acidovorans SPH-1 Genome accession: NC_010002 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 3707541 - 3709901 bp Length : 2361 bp Strand : + Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ajs:Ajs_1707 RNA binding S1 domain protein DNA sequence : ATGCAAAAAATCATTGGCCAAATCGCCGCAGAACTGAATGTCAAGCCGCAGCAAGTGGGTGCTGCGGTCGAATTGCTTGA TGGCGGAGCCACGGTTCCGTTCGTCGCCCGCTACCGCAAGGAAGTGACCGGCGGCCTGGACGACGCGCAATTGCGCCAGC TCGACGAACGCCTGGGCTATCTGCGCGAGCTGGAAGACCGCCGGGGCACGGTGCTCAAGGCCATCGACGAGCAGGGCAAG CTGACCGATGCGCTGCGCCTGGCCATTGCCAATGCGCCGACCAAGCAGGAGCTGGAGGACATCTACCTGCCCTTCAAGCA AAAGCGCCGCACCAAGGGCCAGATTGCCAAGGAATTCGGCATCGAGCCGCTGGCCGACAAGCTGTTTGCCGACCCCACGC TGGACCCGCACAAGGAGGCCGAGGCCTTCTGCAAGCCCGCCACCACCCTGGACGACGGCAAGCCGGGCCCCGATTTCTCC ACCACCTTCGCCGTGCTCGATGGCGTGCGCGACATCCTGTCCGAGCGCTGGGCCGAAGACCCGGCGCTGGTGCAGAAGCT GCGCGAATGGCTGTGGGAAGACGGCCTGCTGCGCTCCAAGAAGATCGAGTCCAAGAACGAGAACGACCCCGAGGTCGCCA AGTTCCGCGACTATTTCGAGTACGACGAACCGATTGGCCGCGTGCCCTCGCACCGCGCGCTGGCCGTGTTCCGCGGCCGC GCGCTGGAGATCCTCGAAGCCAAGCTGGTTCTTCCCGTGGAGCCCGAGCCCGGCCAGCCCAGCCTGGCCGAAGGCAAGAT CGCACTGCACCTGGGCTGGAGCCACGCCAAGCGCGCCAGCGACGATCTGATCCGCAAGTGCGTGGCCTGGACCTGGCGCG TCAAGCTGAGCCTGTCCACCGAGCGCGACCTGTTCTCGCGCCTGCGTGAAGACGCCGAGAAGGTGGCCATCAAGGTCTTT GGCGACAACCTGCGCGACCTGCTGCTGGCCGCGCCTGCGGGCCAGCGCGCCGTCATCGGCCTGGACCCGGGCATCCGCAC GGGCGTCAAGGTGGCCGTGGTGGACAGCACGGGCAAGCTGGTGGACACCACCACCATCTACCCGCATGAGCCGCGCCGCG ACTGGGACGGCTCCCTGGCCGTGCTGGCCCGCCTGGTCGAAAAGCACCAGATCAACCTGATTGCCATCGGCAACGGCACG GCCAGCCGCGAGACGGACAAGCTGGCGGCCGACCTGATCAAGATCGCCAGCAAGGCCGACCGCCAGATCGAGAAGGTCGT GGTCAGCGAGGCCGGCGCTTCCGTGTATTCCGCCAGCGAGTTCGCCTCGCAGGAAATGCCCGATGTGGACGTGAGCCTGC GCGGCGCCGCCAGCATTGCGCGCCGCCTGCAGGACCCGCTGGCCGAGCTGGTCAAGATCGACCCCAAGAGCATCGGCGTG GGCCAGTACCAGCACGACGTGAACCAAAGCGAGCTGGCGCGCCAGCTCGACGCCGTGGTCGAGGACTGCGTGAACTCCGT GGGCGTGGACCTGAACACGGCCTCGGCGCCGCTGCTGTCGCGCGTCTCGGGCCTGTCGGGCAGCGTGGCCAAGTCGGTGG TGCGCTGGCGCGATGCCAACGGCTCCTTCAAGAGCCGCAAGCAGCTGATGGAGGTGGCCGGCCTGGGCGCCAAGACCTTC GAGCAGTCCGCAGGCTTTCTGCGCATCCGCGGCGGGGACAACCCGCTGGACATGACGGGCGTGCACCCGGAAACCTATCC CGTGGTCGAACGCATCATTGCCACCACGGGCAAGAGCGTGGACCAGCTCATGGGCCGCTCCGAGGTGCTCAAGGGCCTGA AGGCCGAGCAGTTCGTGAGCGAGCAGTTCGGTGCCATCACCATCAAGGACATCCTGGGCGAGCTGGAAAAGCCCGGCCGC GACCCGCGCCCGGACTTCGTCGTCGCCCGCTTCAATGACGGCGTGGAAGACATCAAGGACCTCAAGGAAGGCATGACGCT GGAGGGCACGGTCAGCAACGTGGCCCAGTTCGGCGCCTTCGTGGACCTGGGCGTGCACCAGGACGGCCTGGTCCACGTCA GCCAGATGAGCCACAAGTTCATCGAGGACGCGCGCGAGGTCGTCAAGACCGGCCAGATCGTCAAGGTCAAGGTGCTGGAG GTCGATGTGGCGCGCAAGCGCATCAGCCTGACCATGAAGCTGGATGCGGCGCCCGCGCGCCGCGATGGCCCCCGTGACAA CCGCTTCGAGAGCGCAGGCCGGGGCAGCCAGGGCCATCAGGGCGGCCAGCGCCGCGCGCCCGAGCCGGCGCAGCAGTCGG CCATGGCCTCGGCCTTCGCCAAGCTGCAGACCCGCAAGTAA Protein sequence : MQKIIGQIAAELNVKPQQVGAAVELLDGGATVPFVARYRKEVTGGLDDAQLRQLDERLGYLRELEDRRGTVLKAIDEQGK LTDALRLAIANAPTKQELEDIYLPFKQKRRTKGQIAKEFGIEPLADKLFADPTLDPHKEAEAFCKPATTLDDGKPGPDFS TTFAVLDGVRDILSERWAEDPALVQKLREWLWEDGLLRSKKIESKNENDPEVAKFRDYFEYDEPIGRVPSHRALAVFRGR ALEILEAKLVLPVEPEPGQPSLAEGKIALHLGWSHAKRASDDLIRKCVAWTWRVKLSLSTERDLFSRLREDAEKVAIKVF GDNLRDLLLAAPAGQRAVIGLDPGIRTGVKVAVVDSTGKLVDTTTIYPHEPRRDWDGSLAVLARLVEKHQINLIAIGNGT ASRETDKLAADLIKIASKADRQIEKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIGV GQYQHDVNQSELARQLDAVVEDCVNSVGVDLNTASAPLLSRVSGLSGSVAKSVVRWRDANGSFKSRKQLMEVAGLGAKTF EQSAGFLRIRGGDNPLDMTGVHPETYPVVERIIATTGKSVDQLMGRSEVLKGLKAEQFVSEQFGAITIKDILGELEKPGR DPRPDFVVARFNDGVEDIKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKVLE VDVARKRISLTMKLDAAPARRDGPRDNRFESAGRGSQGHQGGQRRAPEPAQQSAMASAFAKLQTRK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 55 |
