Gene Information

Name : Daci_0016 (Daci_0016)
Accession : YP_001561048.1
Strain : Delftia acidovorans SPH-1
Genome accession: NC_010002
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 17295 - 18083 bp
Length : 789 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mms:mma_0289 two-components system response regulator

DNA sequence : 
ATGCCGGCATCCCCACCGATCTCGGCGGAGTCTGGCGCGCCGTATAGTGTCTGCCTCAGTTTCGAGTCAGGCCCTGCCGC
CCGCATGTACCGCTATCTCATCATCGAAGACGACGCGCTGAACGCGCGCTACATCGCCGAAGGCCTGCGCCAGCAGGGCG
CGCAGGTGGCGGTGTGCAGCGATGGTGTGCAGGGCATCGCCATGGCCGTGGGCGAGAGCTGGGATGTGATCATCCTCGAC
CGCATGCTGCCCAACGGCTTCGACGGCCTGCAGATCCTGCAGACGCTGCGCTCCATGGGCAAGCAGACGCCGGTGCTGGT
GCTCAGCGCCCTGTCGGCCACGGACGAGCGCGTGCGCGGCCTCAAGGCCGGCTGCGACGACTACCTGACCAAGCCCTTTG
CCTTCTCCGAACTCTCGGCGCGCCTGGAGGCCCTGGTGCGCCGCGCCCAGATCCCGGCCCCTGCGCGCGAGATGCGCCTG
GCCGACCTGCGGCTGAACCTGCTCACGCGCAGCGCCGAGCGCGCAGGCCAGCCGCTGGCGCTGCAGCCGCGCGAGTTCCG
CCTGCTGGCCTTTCTGATGCAGCATGCGCACCAGATCGTCACGCGCACCATGCTGCTGGAGTCGGTGTGGGACTACCGGT
TCGACCCGCAGACCAATGTCATCGACGTGCACATCAGCCGCCTGCGCGGCAAGGTGGACAAGGGCTTCGAGCCCGCGCTG
ATCCACACCGTGCGCGGCGTGGGCTACAGCCTGTCGGACCGCCCGCAGGACCTGCCGCAGGTGGCCTGA

Protein sequence : 
MPASPPISAESGAPYSVCLSFESGPAARMYRYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILD
RMLPNGFDGLQILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPAREMRL
ADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDPQTNVIDVHISRLRGKVDKGFEPAL
IHTVRGVGYSLSDRPQDLPQVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0197 Protein 2e-41 45
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0125 Protein 5e-41 45
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0111 Protein 5e-48 44
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0308 Protein 1e-42 43
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0638 Protein 3e-40 43
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0347 Protein 4e-43 42
Daci_0016 YP_001561048.1 two component transcriptional regulator BAC0083 Protein 5e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_0016 YP_001561048.1 two component transcriptional regulator VFG0596 Protein 3e-37 44
Daci_0016 YP_001561048.1 two component transcriptional regulator VFG1389 Protein 2e-34 44
Daci_0016 YP_001561048.1 two component transcriptional regulator VFG1390 Protein 6e-38 41