Gene Information

Name : Cphy_0954 (Cphy_0954)
Accession : YP_001558075.1
Strain : Clostridium phytofermentans ISDg
Genome accession: NC_010001
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 1217507 - 1217698 bp
Length : 192 bp
Strand : +
Note : PFAM: helix-turn-helix domain protein; KEGG: spb:M28_Spy1636 transcriptional regulator, Cro/CI family

DNA sequence :
GTGAAGAATTTAAAGTTAAAATCGGCTCGAGTCGCTATGGACCTTTCACAACAGCAGCTGGCTGATTTGGTAGGGGTATC
AAGGCAGACAATCTCTTTGATTGAAAAAGGAGATTATAATCCAACCATTAATCTATGTATTGCAATATGTAAAGTATTGC
ATAAGACGCTAGATGAATTGTTTTGGAATTAG

Protein sequence :
MKNLKLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELFWN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-06 44
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-06 44
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 7e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_0954 YP_001558075.1 XRE family transcriptional regulator VFG2168 Protein 7e-07 44
Cphy_0954 YP_001558075.1 XRE family transcriptional regulator VFG2175 Protein 7e-07 44