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Name : araD (Cphy_3928) Accession : YP_001561014.1 Strain : Clostridium phytofermentans ISDg Genome accession: NC_010001 Putative virulence/resistance : Unknown Product : L-ribulose-5-phosphate 4-epimerase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0235 EC number : 5.1.3.4 Position : 4826781 - 4827503 bp Length : 723 bp Strand : + Note : catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source DNA sequence : ATGTTAGAAAAGTTAAAAGAAGAAGTTTATCAAGCTAATATGATGTTACCAAAGCACGGATTAATTACATTAACATGGGG AAATGTTTCTGCTCGTGATAAAGAAACAGGATATATTGTAATTAAACCATCCGGAGTTGAGTATACTAATATGAAACTAG AGGACATGGTTGTGGTAGACTTAGAAGGAAATGTAATTGACGGTGCCTTAAATCCTTCTTCTGATACCCCAACTCATATA GAATTATATCAAGCATATCCTGATCTTGGTGGTATTGTTCATACTCATTCTCGCTTTGCAACTATTTTTGCACAAGCAGG AGCTTCCATCCCTGCGCTTGGTACAACCCATGCAGATTATTTTTATGGTTCCATACCATGCACTCGTAAAATGACAAAAA GAGAAATCAAAGGATCCTATGAGAAAGAAACGGGTAGCGTTATCATTGATACCTTCGAAGAACATAACATCAATCCATAT CAGGTTCCATCTGTTCTTGTTCATAGTCATGGTCCATTCACCTGGGGAAGCAGTGCTATGAAAGCAGTGGAAAACGCAAT TGTTCTAGAGGAAGTAGCCCAGATGGCTTGGCATACTCTACTACTTTATCAAAGTAATCATATGACTACCACCTGCCCTT CCATGCAACAGGATTTACTAGATAAGCACTACCTTCGAAAACATGGTCCAAACTCTTACTATGGTCAAAAACGTTCCGAA TAG Protein sequence : MLEKLKEEVYQANMMLPKHGLITLTWGNVSARDKETGYIVIKPSGVEYTNMKLEDMVVVDLEGNVIDGALNPSSDTPTHI ELYQAYPDLGGIVHTHSRFATIFAQAGASIPALGTTHADYFYGSIPCTRKMTKREIKGSYEKETGSVIIDTFEEHNINPY QVPSVLVHSHGPFTWGSSAMKAVENAIVLEEVAQMAWHTLLLYQSNHMTTTCPSMQQDLLDKHYLRKHGPNSYYGQKRSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| araD | YP_281517.1 | L-ribulose-5-phosphate 4-epimerase | Not tested | Not named | Protein | 9e-60 | 55 |
