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Name : Cphy_3556 (Cphy_3556) Accession : YP_001560644.1 Strain : Clostridium phytofermentans ISDg Genome accession: NC_010001 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 4389160 - 4390671 bp Length : 1512 bp Strand : - Note : TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: csc:Csac_0828 lysyl-tRNA synthetase DNA sequence : ATGAAAACAGTGGCAGAGGAGAATAAGGTTCAAAACGCAAATAACGCGCAAGATGTAAATGAATTAATTAAAGTAAAAAT GCAAAAGCTTGCTGATTTACAAGAAGCAGGAAAAGATCCGTTTCAGATTATGAAGTATGATGTGACTCATCATACTATAG ATGTCAAAGATAACTTTGAGAATTTAGAAGGTCAAATCGTAGCAATTGCTGGTAGAATTATGACAAAGCGAGTGATGGGT AAAGCTTCCTTTATCAATATTCAGGACAAGCTTGGTAATATTCAATCCTATATTCAAAGAGACAGCATAGGTGAGGAAGA ATATGCTGGATTTAAGAAGTTTGATATCGGTGATATCGTAGGTATCAAAGGAGAGGTATTCAAAACACACGCAGGGGAAA TCTCAGTACGTGCAAATGAAATTCTTCTATTATCAAAATGTTTACAAGTATTACCTGAAAAGTTCCATGGTTTAACAGAT ACAGATACAAGATATCGTCAAAGATATGTAGACTTAATGATGAATCCAGAAGTAAAAGAGACATTTATTAAGCGTTCTGC AATCATCCGTGAAATCCGTAATTATTTAGATGGAGAAGACTTTATTGAAGTAGAAACTCCAGTTTTAGTTAAGAATGCAG GTGGTGCTGCTGCAAGACCATTTATGACACATCACAATTCTTTAGATGAAGACTTAAACCTAAGAATATCCTTAGAATTA TATTTAAAGAGATTGATTGTTGGTGGTTTAGAAAGAGTATATGAAATCGGTAGAGTATTCCGTAACGAAGGCTTATCTGT TCGTCATAACCCTGAATTTACTCTACTTGAGTTATATCAAGCATACACTGATTATAACGGAATGATGGATTTAACAGAAA AATTATTCCGTACCGTGGCAGAAAAAGTAATTGGTACAACAAAGATTTCCTATGAAGGTGTTGAAATCGACTTAGGCAAA CCATTTGAGCGTATTACCATGGTAGAAGCAGTAAAGAAATATAAAGGTATTGACTTTGATCAGGTTAAGACAGAAGAAGA GGCTAAGGCTCTTGCAAAAGAGCATCATGTTTCTTTTGAAGACAGACATAAAAAGGGTGATATCTTAAGCTTATTCTTCG AAGAATTTGTAGAAGAGCATCTAATACAACCAACCTTTGTAATAGATCATCCAGTTGAAATTTCTCCACTTACAAAGAAG AAACCAGAGAACCCAGAGTACACAGAGCGATTTGAGTTGTTTGTGACTAAGAGAGAAATGGCAAATGCATACTCTGAGTT AAATGATCCAATCGATCAAAGAGAACGTTTTGTGGCACAAGAAGCATTAAAAGCTGCTGGAGATGAGGAAGCAAACTCCA TGGACGAAGATTTCCTAAATGCATTAGCATATGGTATGCCTCCAACTGGTGGTATCGGTATTGGAATCGACCGTCTCGTA ATGTTATTAACGGATTCTTCTGCAATCCGCGATGTATTATTGTTCCCTACTATGAAGAGCCTAGATAAATAA Protein sequence : MKTVAEENKVQNANNAQDVNELIKVKMQKLADLQEAGKDPFQIMKYDVTHHTIDVKDNFENLEGQIVAIAGRIMTKRVMG KASFINIQDKLGNIQSYIQRDSIGEEEYAGFKKFDIGDIVGIKGEVFKTHAGEISVRANEILLLSKCLQVLPEKFHGLTD TDTRYRQRYVDLMMNPEVKETFIKRSAIIREIRNYLDGEDFIEVETPVLVKNAGGAAARPFMTHHNSLDEDLNLRISLEL YLKRLIVGGLERVYEIGRVFRNEGLSVRHNPEFTLLELYQAYTDYNGMMDLTEKLFRTVAEKVIGTTKISYEGVEIDLGK PFERITMVEAVKKYKGIDFDQVKTEEEAKALAKEHHVSFEDRHKKGDILSLFFEEFVEEHLIQPTFVIDHPVEISPLTKK KPENPEYTERFELFVTKREMANAYSELNDPIDQRERFVAQEALKAAGDEEANSMDEDFLNALAYGMPPTGGIGIGIDRLV MLLTDSSAIRDVLLFPTMKSLDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-115 | 50 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cphy_3556 | YP_001560644.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-115 | 50 |
