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Name : Cphy_3494 (Cphy_3494) Accession : YP_001560584.1 Strain : Clostridium phytofermentans ISDg Genome accession: NC_010001 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4309695 - 4311578 bp Length : 1884 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lsl:LSL_0995 UDP-N- DNA sequence : ATGAAAAGGTATATAAAGGATAAACAGTTATTGCTTCGAAGATTATGTTTGCTTTTGATAGATATAGGAGCTGTTTGCTT AATCAGTATTTTATCTCTATTAATTCGATACGATTTTAGATATAAAAATATAGATACGATATACCTTGATACTATATGGA CATATTTCCCTATTAACATCATTACAGTACTACTAATATTCTATATTTTTCGCTTGTATCACAGTTTGTGGTTATTTGCA GGTATTACTGAGTTAGAGAATATTATTGCTGCATCAATCGGGGTTTCAGCCTTACAAGTAATTGGTTTCATACTTTTAAA GCTTCCAATTCCAAGAAGCTATTTCTTCATATTTCCGGTTTTATTAATTATAGCTACCATGGCTTCGAGATTTACTTATC GCGCTGTTCGGGTGAAGTTACGGAAGAGAGAGAATGGGAAGTCCTGTGAGAATGTGATGGTAATTGGTGCTGGAGAAGCA TCCAATATGATAATCAAAGAAATAATAAATAGTGACCATATACATAAAGTAGTTAAGTGCATCATAGATGATGCAGAAGA TAAATTAGGTCGCTATATCCATGGAATTAAAGTTATTGGTAGTCGAGACACCATCATAGATAATGTGATGAAGTATGAGA TAAATGAGATTATCATAGCGATGCCATCGGTATCAAGAAAAGAAATTAGTAAAATCTTAGAAATCTGCAAAGAAACAGAT TGTAAGTTATATATATTACCAGGAATGTATCAATTTTTAAACGGTGAAGTTGGTGTATCAGAACTTCGCGGTGTTGAGGT TGAAGATTTACTGGGACGAGATCCTATAAGAGTAGATTTAGACTCGATTATGGGTTATGTAAGTGACAAGGTTGTTTTAG TTACTGGCGGCGGTGGTTCTATTGGAAGTGAACTTTGTAGGCAAATAGCAGGGCATAAACCAAAGCAATTAGTTATCGTA GATATCTATGAAAATAATGCTTATGATATACAGCAGGAGCTACAGAAAAGATATCCAAATTTAGATATTGTAACACTGAT TGGTTCGGTACGTAATGAGAAACGACTTGACAAAATATTTGACACTTATCGCCCGAACATTGTTTATCACGCTGCAGCCC ATAAGCATGTACCTTTAATGGAAGATAGCCCAAATGAAGCTGTTAAAAACAATGTTTTTGGAACATTTAAAACTGCCCAA GCTGCCGATAAATATGGTGTTGAAAAGTTTGTATTAATTTCATCTGACAAAGCAGTTAATCCTACAAACATCATGGGTGC AACGAAGCGTATGTGTGAGATGATTGTACAAACATTTAATAGAAAATCTAAAACTGAATTTGTAGCGGTTCGATTTGGTA ATGTACTCGGAAGTAACGGTAGTGTAATTCCACTTTTTAAAAAGCAAATTGAAGCAGGTGGGCCTGTTACCGTAACACAT CCGGATATTATCCGATATTTTATGACAATACCAGAAGCGGTATCTTTAGTATTACAAGCAGGTGCCTATGCAAAGGGTGG AGAGATATTTGTACTGGATATGGGAGAGCCAGTTAAAATTCTTGATTTAGCTACAAACCTCATTCGCCTGTCTGGGTATA TACCAGATGTAGATATAAAAATTAAGTTTACTGGATTAAGACCTGGTGAAAAATTATATGAAGAGCTTCTTATGGAAGAG GAGGGATTAGGTGAAACCGAAAACTCACAGATATTTATTGGGAAGCCTTTAAAGATTGATGATGAAAAGTTTCATCATCA ATTAGAGGAGTTATACACCGCATGTAATAACGAGACAGAGTATATTCGAGAAATGGTCGGAGAAATCGTAGATACCTATT CTTATAATATTGAAGCAAGAGAAGAAGTTGCAGCTTCTGAATAG Protein sequence : MKRYIKDKQLLLRRLCLLLIDIGAVCLISILSLLIRYDFRYKNIDTIYLDTIWTYFPINIITVLLIFYIFRLYHSLWLFA GITELENIIAASIGVSALQVIGFILLKLPIPRSYFFIFPVLLIIATMASRFTYRAVRVKLRKRENGKSCENVMVIGAGEA SNMIIKEIINSDHIHKVVKCIIDDAEDKLGRYIHGIKVIGSRDTIIDNVMKYEINEIIIAMPSVSRKEISKILEICKETD CKLYILPGMYQFLNGEVGVSELRGVEVEDLLGRDPIRVDLDSIMGYVSDKVVLVTGGGGSIGSELCRQIAGHKPKQLVIV DIYENNAYDIQQELQKRYPNLDIVTLIGSVRNEKRLDKIFDTYRPNIVYHAAAHKHVPLMEDSPNEAVKNNVFGTFKTAQ AADKYGVEKFVLISSDKAVNPTNIMGATKRMCEMIVQTFNRKSKTEFVAVRFGNVLGSNGSVIPLFKKQIEAGGPVTVTH PDIIRYFMTIPEAVSLVLQAGAYAKGGEIFVLDMGEPVKILDLATNLIRLSGYIPDVDIKIKFTGLRPGEKLYEELLMEE EGLGETENSQIFIGKPLKIDDEKFHHQLEELYTACNNETEYIREMVGEIVDTYSYNIEAREEVAASE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-93 | 48 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-96 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cphy_3494 | YP_001560584.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 3e-92 | 48 |
