Gene Information

Name : Cphy_2078 (Cphy_2078)
Accession : YP_001559185.1
Strain : Clostridium phytofermentans ISDg
Genome accession: NC_010001
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2562731 - 2563414 bp
Length : 684 bp
Strand : +
Note : PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein

DNA sequence : 
GTGGAAATATTACGTGTTGATAATCTAACAAAAACATATGGAGAAGGAAATAATAAAGTGAATGCCTTAGACGGCGTTTC
CTTTCGAGTAAACCAAGGTGAGTTTGTTGCTATTATAGGGCCTTCCGGTTCTGGTAAATCAACGTTGCTGCATATGATTG
GTGGTGTAGACCAACCATCGCAGGGAAAAGTGTTTGTAAATGGAAAGGATGTTTACAATCAAACGGAAGAGCAGTTGGCA
ATCTTTCGTAGGAGAGAAGTCGGGTTAATCTATCAATTCTATAACTTGATACCAGTAATGAATGTGGTTGAAAATATAAC
ACTTCCGGTGCTTATGGATGGCAGAAAAGTAAACGAAGACAGATTATCAGAGCTTCTTACCGTTCTAAATTTAAACGGCA
GGGAAGGTCATTTGCCAAATCAGTTATCTGGAGGTCAGCAACAAAGAGTGTCGATTGGAAGAGCATTAATGAATGCACCT
TCTATCGTATTAGCAGATGAACCAACTGGTAATTTAGATTCAAAAAACAGTCAAGAAATCATCGAATTGCTAAAGTTATC
AAATAAAAAGTACAATCAGACCTTGTTAGTCATCACTCATGATGAGAATATAGCACTTCAAGCAGATCGAATCATCGCAA
TCGGAGACGGAAAAATCACGAGAGACGAGGTGATTCGTCGATGA

Protein sequence : 
MEILRVDNLTKTYGEGNNKVNALDGVSFRVNQGEFVAIIGPSGSGKSTLLHMIGGVDQPSQGKVFVNGKDVYNQTEEQLA
IFRRREVGLIYQFYNLIPVMNVVENITLPVLMDGRKVNEDRLSELLTVLNLNGREGHLPNQLSGGQQQRVSIGRALMNAP
SIVLADEPTGNLDSKNSQEIIELLKLSNKKYNQTLLVITHDENIALQADRIIAIGDGKITRDEVIRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_2078 YP_001559185.1 ABC transporter CP001581.1.gene798.p Protein 8e-62 58
Cphy_2078 YP_001559185.1 ABC transporter CP001581.1.gene598.p Protein 1e-57 54
Cphy_2078 YP_001559185.1 ABC transporter NC_012469.1.7686878. Protein 3e-38 42