Gene Information

Name : Cphy_1243 (Cphy_1243)
Accession : YP_001558360.1
Strain : Clostridium phytofermentans ISDg
Genome accession: NC_010001
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1568748 - 1569437 bp
Length : 690 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein

DNA sequence : 
ATGTTAATAGAGATTAAAAATTTAAAGAAAACTTATGGAATCGGCGAAACTACAGTACATGCTCTAAAAGGAATTAACCT
ATCGATTGAACAAGGTGAGTTTATTGCTATTGTAGGAACAAGTGGGAGTGGTAAAAGTACATTGCTAAATCTTATCGGAG
GATTAGATTATCCTACGGAAGGAAATATTCTTATTAACGATAGAGATATCTACGCATTGAAACCGGATGAATTAACAATA
TTTCGAAGAAGATCTATTGGTTTTGTATTTCAAAGCTATAATTTGGTACCTATATTAAATGTTTATCAAAACATAATGTT
ACCATTACAATTAGATAATGTAAGACCAGATAAAAAGTTTTTAGAACTTATAATAAATACTCTCGGTATCTCTGAAAAGA
AAAACAGTCTTCCAAATAATTTATCTGGCGGGCAGCAGCAAAGAGTTGCAATTGCAAGAGCATTGATAGCACATCCACAA
GTAATATTAGCGGATGAACCTACCGGTAATTTAGATAGTAAAACAGCTCTTGAAGTAATTTTATTATTGAAGCAGTTAAA
TGAAACCTACGGTCAGACAATTATAATGATAACGCATGATGAAGAAATTGCGCAAATTGCTACAAGGAGAATACATATAG
AGGATGGTCGTTTAATCTCTGATACGAAGGAGGTATTTGGCCATGAATAA

Protein sequence : 
MLIEIKNLKKTYGIGETTVHALKGINLSIEQGEFIAIVGTSGSGKSTLLNLIGGLDYPTEGNILINDRDIYALKPDELTI
FRRRSIGFVFQSYNLVPILNVYQNIMLPLQLDNVRPDKKFLELIINTLGISEKKNSLPNNLSGGQQQRVAIARALIAHPQ
VILADEPTGNLDSKTALEVILLLKQLNETYGQTIIMITHDEEIAQIATRRIHIEDGRLISDTKEVFGHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-38 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-38 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-38 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_1243 YP_001558360.1 ABC transporter CP001581.1.gene798.p Protein 7e-62 59
Cphy_1243 YP_001558360.1 ABC transporter CP001581.1.gene598.p Protein 8e-63 58
Cphy_1243 YP_001558360.1 ABC transporter NC_012469.1.7686878. Protein 9e-43 47
Cphy_1243 YP_001558360.1 ABC transporter NC_008702.1.4606598. Protein 4e-40 46
Cphy_1243 YP_001558360.1 ABC transporter NC_012469.1.7685735. Protein 1e-36 41