Gene Information

Name : Cphy_0971 (Cphy_0971)
Accession : YP_001558092.1
Strain : Clostridium phytofermentans ISDg
Genome accession: NC_010001
Putative virulence/resistance : Virulence
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 1239888 - 1240298 bp
Length : 411 bp
Strand : +
Note : PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD3352 AraC-family transcriptional regulator

DNA sequence : 
ATGAGTGTAAGTATATCGAAAGTGAAAAAGTATATTGAAGAAAATTTTAAGGATGACATAACTCTTGATGATATAGCGAA
GAATGTTGGATATTCAAAATATCATCTAAATCGTATGTTTCTTGAAAATACAGGTCTAACAATCCATAAATATATATGCG
AAAGACGATTAACAGAGGCTGCTGATTTATTACTCTATACCGATCAATCGATCGTTGATATCGCATTAAGTATTGGATAT
ACTTCACAACAGGCTTTCACATTGGCATTTAAGCAAATGTTTGATTGTACACCATATAAATATAGGATTAGTACAATGAC
ATTTGTTTCAACGAAATGCTTGGAAATAAGCCCTTCTAAACGTGACTATGGTGTTAAAATGATTATTTCTTATGGGAGGG
TGGCAGCATGA

Protein sequence : 
MSVSISKVKKYIEENFKDDITLDDIAKNVGYSKYHLNRMFLENTGLTIHKYICERRLTEAADLLLYTDQSIVDIALSIGY
TSQQAFTLAFKQMFDCTPYKYRISTMTFVSTKCLEISPSKRDYGVKMIISYGRVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-13 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_0971 YP_001558092.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 7e-14 43
Cphy_0971 YP_001558092.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 6e-14 42
Cphy_0971 YP_001558092.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 5e-14 41
Cphy_0971 YP_001558092.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 6e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_0971 YP_001558092.1 AraC family transcriptional regulator VFG0585 Protein 7e-14 43