Gene Information

Name : Cphy_0963 (Cphy_0963)
Accession : YP_001558084.1
Strain : Clostridium phytofermentans ISDg
Genome accession: NC_010001
Putative virulence/resistance : Resistance
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1231159 - 1231836 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbe:Cbei_2249 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAAAAAATATATTAATAGTTGATGATGATAAAGACATTAGTGAGCTTATTGCCGTATATTTAAAATCAGAAGATTA
TTACGTTGATAAAGCTTGTAGTGGACTAGAAGCTCTACAATTAATAAAAGAAAATAACTTTGATTTGGTAATATTAGATA
TTATGATGCCAAAAATGGATGGTTTAGAGACTTTGATTCATATAAGAAAAGATTTTAATATGCCGATTATTTTTCTTACT
GCAAAAAATCAGGAAATAGACTTGATTAGGGGCTTATCCTTAGGTGCCGACGATTATATCTCAAAACCTTTTAGCTCGAT
GGAATTGATTGCTAGAGTGAAAGCTCAACTAAGAAGATATACGATATTTAATAATCTAGATAATAATGACATTTCGATTG
GAGAATTAGTTTTAAGTCTTGATATGCATAGGGTGACGGTGGCAGGAAAGGAAGTCAAATTGACACCAACTGAATATAAA
ATATTAGAATTATTCTGCAGAAATAAAAATATCGTATTTAGTGTTGAACAAATCTATGAAAATATTTGGAGAGATAAATT
TGCAGTTGGTGATACGTCAATTATGGTCCATATTACAAAACTTAGGCAAAAAATTGAAAAAGATCCAAAGAATCCTGAGT
ATATAAAAACGGTCTGGGGAGTTGGTTATAAAATATGA

Protein sequence : 
MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMDGLETLIHIRKDFNMPIIFLT
AKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTIFNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYK
ILELFCRNKNIVFSVEQIYENIWRDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sboR YP_006309915.1 SboR Not tested FWisland_1 Protein 9e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cphy_0963 YP_001558084.1 two component transcriptional regulator NC_014475.1.orf0.gen Protein 2e-48 48
Cphy_0963 YP_001558084.1 two component transcriptional regulator AM180355.1.gene1830. Protein 7e-50 48
Cphy_0963 YP_001558084.1 two component transcriptional regulator NC_005054.2598277.p0 Protein 2e-48 48
Cphy_0963 YP_001558084.1 two component transcriptional regulator AF155139.2.orf0.gene Protein 3e-49 47
Cphy_0963 YP_001558084.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 2e-49 46
Cphy_0963 YP_001558084.1 two component transcriptional regulator DQ212986.1.gene4.p01 Protein 4e-49 45
Cphy_0963 YP_001558084.1 two component transcriptional regulator AF130997.1.orf0.gene Protein 6e-46 43
Cphy_0963 YP_001558084.1 two component transcriptional regulator AF162694.1.orf4.gene Protein 1e-47 42
Cphy_0963 YP_001558084.1 two component transcriptional regulator EU250284.1.orf4.gene Protein 3e-46 42
Cphy_0963 YP_001558084.1 two component transcriptional regulator NC_012469.1.7685629. Protein 5e-32 41
Cphy_0963 YP_001558084.1 two component transcriptional regulator HE999704.1.gene2815. Protein 6e-33 41