Gene Information

Name : Sbal195_4653 (Sbal195_4653)
Accession : YP_001557068.1
Strain :
Genome accession: NC_009999
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 61708 - 62397 bp
Length : 690 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: sdn:Sden_3021 integrase, catalytic region

DNA sequence : 
ATGAGTGTCAGTAAGTCAGGCTATTACGATTGGCATAAACGCCCTGCAAACGTGATAAGCGTTGAAACACTGAAGCTTTA
TCGCCTTGTTCGACAGCTATTTAAGCAAAGTCGAGGCAGCTTAGGGAATCGTGAAATGGTGAAGAAATTGCGCAAGGAAG
GCTACCAGGTTGGTCGCTATCTCGTTCGTAAAATTATGCACCGCCTTCGACTCAAAGCAACCCAGCGACGCGCTTACAAG
GTGACTACGCAGCGAAAACACTCAGATGCTGTGGCTGATAACCTGCTAAACATGAACTTTAACCCCGTATCGGCTAATGA
GGTTTGGGCGGGTGACGTGACCTATTTAAAGACAGGTGAAGGTTGGATGTATTTGGCAGTGGTGATGGATTTATATTCAC
GCCGGATTGTGGGATGGCACATAGACAAACGCATGACCACAGATTTGATATCTAAGGCATTAATAAAAGCCTACAACCTG
CGCCAACCGGCCAGAGGGTTGGTATTTCACAGTGACCGAGGCTCGCAATATACCAGTAAGCAGTTCGGCAGGTTGCTATC
GAGCTATGGTATCCGAGCCAGCATGGGTGATGTGGGTGCGTGTTGGGATAATGCCGTTGTTGAGCGATTCTTTGGTAGCT
TGAAACACGATTGGATTTTTAAAGTTGCTCAACCTGTAGTGGCACACTAA

Protein sequence : 
MSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRAYK
VTTQRKHSDAVADNLLNMNFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWHIDKRMTTDLISKALIKAYNL
RQPARGLVFHSDRGSQYTSKQFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPVVAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-36 44
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-35 44
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 9e-32 43
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 9e-32 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 8e-33 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-32 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-32 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 5e-33 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 4e-32 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-32 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 8e-37 41
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 7e-37 41
unnamed AAF09030.1 unknown Not tested SHI-O Protein 7e-37 41
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 7e-37 41
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-36 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-36 41
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-36 41
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 3e-36 41
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-40 41
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-40 41
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-40 41
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-40 41
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-40 41
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-40 41
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-40 41
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal195_4653 YP_001557068.1 integrase catalytic region VFG1484 Protein 5e-32 43
Sbal195_4653 YP_001557068.1 integrase catalytic region VFG0785 Protein 3e-33 42
Sbal195_4653 YP_001557068.1 integrase catalytic region VFG1706 Protein 4e-37 41
Sbal195_4653 YP_001557068.1 integrase catalytic region VFG1122 Protein 2e-40 41