Gene Information

Name : Sbal195_2280 (Sbal195_2280)
Accession : YP_001554708.1
Strain : Shewanella baltica OS195
Genome accession: NC_009997
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 2702054 - 2702854 bp
Length : 801 bp
Strand : +
Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: cvi:CV_2609 type III secretion system EscT protein

DNA sequence : 
ATGACAACTCAGCTACCCAACCTATTAACAGCACAACTTCCGGTGTTGGCACTCTGTATGATGCGCCCTTTAGGCATGAT
GCTGCTATTACCCTTATTTAAAGGGGGGGCAATGGGGAGCGCATTAATTCGTAATAGTCTGATTTTAATGTTTGCTTTAC
CTACTGTGCTGGCAATGGATGAAATGCAGCCGATACTGCAGCAGGCCGACACTTGGATGCTCATCAGCCTATTTGGCAAA
GAAATTATTGTAGGCATGTTACTCGGTTTCTGTGCCGCCATTCCCTTTTGGGCCATAGATATGGCGGGATTTGTAATTGA
CACAATGCGGGGGGCATCCATGTCGACTGTACTTAACCCATTGATGGGACTGCAATCATCGATTTATGGCATGCTGTTTA
CTCAAGTTCTTACTGTGCTGTTTTTAGTCTCGGGTGGTTTTAATTTTCTGCTAACTGCACTTTATCAGTCATATCAACAA
TTACCCCCAGGATTTAATTTAACGCTAAGCCAGCCCTTGATGGTGTTTATAGCCCATGAGTGGCAATTGATGTGCCAACT
ATGTCTCAGTTTTGCCATGCCCGCCATGGTGATTATGATCTTAGTCGATGTAGCCTTAGGGCTAGTAAACCGCTCGGCGC
AGCAGTTAAACGTCTTCTTTTTGTCTATGCCCATTAAAAGCGCTTTGGTCTTACTGTTATTGATCTACAGCTTACAGTTT
GCTTTGTCCCATTACCTGCAGACCATTTCTGGGGTAGAGCAGCACGTAGATATTTTGTTTGGACTCTTAGCAGGGCACTA
G

Protein sequence : 
MTTQLPNLLTAQLPVLALCMMRPLGMMLLLPLFKGGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGK
EIIVGMLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQ
LPPGFNLTLSQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQF
ALSHYLQTISGVEQHVDILFGLLAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 3e-43 53
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 3e-40 50
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 4e-39 49
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 5e-39 49
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 5e-40 49
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 5e-40 49
lscT AAO18038.1 LscT Virulence TTSS locus Protein 5e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal195_2280 YP_001554708.1 type III secretion protein SpaR/YscT/HrcT VFG0521 Protein 2e-39 49