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Name : smpB (P9211_17411) Accession : YP_001551626.1 Strain : Prochlorococcus marinus MIT 9211 Genome accession: NC_009976 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1568386 - 1568886 bp Length : 501 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGACTAAGAAAAAGAATAAAAAAGTGACCAAATCAGAACGAGGGGAGGCAAACCGCCGATTAGCTGAGAATCGACTTGC AAGACATCAATATGAAATTTTAGAAACACTTGAAACAGGTATCGAGCTAGTTGGAACAGAAGTCAAATCGATCCGTGCTG GTAATACAAATCTAAGAGATGGATTTTGTCTTATTCGCGAAGGAGAGCTTCAGCTACATAATGTTCACATTTCTCCTCTA AATAATGCTGGAAACTTCTTCAACCACGATCCATTAAGAACCAGAAAGCTCCTAGCACATCGAAAAGAGATTAATAAACT TGAAATCCAGGTAGCTAGAAAAGGTCTCACTTTGATTCCTTTAAGTATTCATCTAAAGGGCTCATGGATCAAGATTATTA TTGGAGTTGGCAAGGGTCGTAAGCTCCATGACAAAAGAGAGGATGATAAAAGAAAGCAAGCAAATCGAGATATGAAGTCA GCTCTAGCTCGTTATCGCTGA Protein sequence : MTKKKNKKVTKSERGEANRRLAENRLARHQYEILETLETGIELVGTEVKSIRAGNTNLRDGFCLIREGELQLHNVHISPL NNAGNFFNHDPLRTRKLLAHRKEINKLEIQVARKGLTLIPLSIHLKGSWIKIIIGVGKGRKLHDKREDDKRKQANRDMKS ALARYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-14 | 44 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 2e-11 | 44 |
